CircRNA Information

General Information
circRNA Basic Information
CircID chr22:46362443|46362754
Strand +
CircType exon
Host Gene ENSG00000075275.15;
Algorism CIRI2;
Sequence CCCTTGTCTTAAAATCACTTCGCTATGTGGGAAAGGTGGAGATACTTTTATATATTTGTATGGGACTCTGAGGAGGTGCAACCTGTATATATATTGCATTCGTGCTGACTTTGTTATCCCGAGAGATCCATGCAATGATCTCTTGCTGTCTTCTCTGTCAAGATTGCACAGTTGTACTTGAATCTGGCATGTGTTGACGAAACTGGTGCCCCAGCAGATCAAAGGTGGGAAATACGTCAGCAGTGGGGCTAAAACCAAGCGGCTAGAAGCCCTACAGCTGCCTTCGGCCAGGAAGTGAGGATGGTGTGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:46362443|46362754 hsa-miR-19a-5p 0 0 1
chr22:46362443|46362754 hsa-miR-19a-3p 0 0 1
chr22:46362443|46362754 hsa-miR-26b-5p 0 0 1
chr22:46362443|46362754 hsa-miR-26b-3p 0 0 1
chr22:46362443|46362754 hsa-miR-208a-5p 0 0 1
chr22:46362443|46362754 hsa-miR-208a-3p 0 0 1
chr22:46362443|46362754 hsa-miR-410-5p 0 0 1
chr22:46362443|46362754 hsa-miR-410-3p 0 0 1
chr22:46362443|46362754 hsa-miR-495-5p 0 0 1
chr22:46362443|46362754 hsa-miR-495-3p 0 0 1
chr22:46362443|46362754 hsa-miR-505-5p 0 0 1
chr22:46362443|46362754 hsa-miR-505-3p 0 0 1
chr22:46362443|46362754 hsa-miR-552-5p 0 0 1
chr22:46362443|46362754 hsa-miR-552-3p 0 0 1
chr22:46362443|46362754 hsa-miR-641 0 0 1
chr22:46362443|46362754 hsa-miR-208b-5p 0 0 1
chr22:46362443|46362754 hsa-miR-208b-3p 0 0 1
chr22:46362443|46362754 hsa-miR-1297 0 0 1
chr22:46362443|46362754 hsa-miR-548l 0 0 1
chr22:46362443|46362754 hsa-miR-1253 0 0 1
chr22:46362443|46362754 hsa-miR-548n 0 0 1
chr22:46362443|46362754 hsa-miR-486-3p 0 0 1
chr22:46362443|46362754 hsa-miR-1224-3p 0 0 1
chr22:46362443|46362754 hsa-miR-490-5p 0 1 1
chr22:46362443|46362754 hsa-miR-188-3p 0 1 1
chr22:46362443|46362754 hsa-miR-628-5p 0 0 1
chr22:46362443|46362754 hsa-miR-1260 0 0 1
chr22:46362443|46362754 hsa-miR-1280 0 0 1
chr22:46362443|46362754 hsa-miR-26a 0 0 1
chr22:46362443|46362754 hsa-miR-19b 0 0 1
chr22:46362443|46362754 hsa-miR-1826 0 0 1
chr22:46362443|46362754 hsa-miR-499-5p 0 0 1
chr22:46362443|46362754 hsa-miR-1260a 0 1 0
chr22:46362443|46362754 hsa-miR-4323 0 1 0
chr22:46362443|46362754 hsa-miR-4286 0 1 0
chr22:46362443|46362754 hsa-miR-3714 0 1 0
chr22:46362443|46362754 hsa-miR-4686 0 1 0
chr22:46362443|46362754 hsa-miR-451b 0 1 0
chr22:46362443|46362754 hsa-miR-4731-5p 0 1 0
chr22:46362443|46362754 hsa-miR-4707-3p 1 0 0
chr22:46362443|46362754 hsa-miR-5196-3p 0 1 0
chr22:46362443|46362754 hsa-miR-3189-3p 1 0 0
chr22:46362443|46362754 hsa-miR-135b-3p 0 1 0
chr22:46362443|46362754 hsa-miR-3158-3p 0 1 0
chr22:46362443|46362754 hsa-miR-3619-3p 1 0 0
chr22:46362443|46362754 hsa-miR-4758-3p 1 1 0
chr22:46362443|46362754 hsa-miR-605-3p 0 1 0
chr22:46362443|46362754 hsa-miR-7849-3p 0 1 0
chr22:46362443|46362754 hsa-miR-449c-5p 0 1 0
chr22:46362443|46362754 hsa-miR-6729-5p 1 0 0
chr22:46362443|46362754 hsa-miR-1185-1-3p 0 1 0
chr22:46362443|46362754 hsa-miR-1185-2-3p 0 1 0
chr22:46362443|46362754 hsa-miR-6511a-3p 1 0 0
chr22:46362443|46362754 hsa-miR-135a-2-3p 0 1 0
chr22:46362443|46362754 hsa-miR-412-3p 1 1 0
chr22:46362443|46362754 hsa-miR-1912-5p 0 1 0
chr22:46362443|46362754 hsa-miR-454-3p 0 1 0
chr22:46362443|46362754 hsa-miR-5011-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:46362443|46362754
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MWERWRYFYIFVWDSEEVQPVYILHSC
Nucleotide Sequence ATGTGGGAAAGGTGGAGATACTTTTATATATTTGTATGGGACTCTGAGGAGGTGCAACCTGTATATATATTGCATTCGTGCTGA
CircID chr22:46362443|46362754
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MYLNLACVDETGAPADQRWEIRQQWG
Nucleotide Sequence TTGTACTTGAATCTGGCATGTGTTGACGAAACTGGTGCCCCAGCAGATCAAAGGTGGGAAATACGTCAGCAGTGGGGCTAA
CircID chr22:46362443|46362754
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MYGTLRRCNLYIYCIRADFVIPRDPCNDLLLSSLSRLHSCT
Nucleotide Sequence TTGTATGGGACTCTGAGGAGGTGCAACCTGTATATATATTGCATTCGTGCTGACTTTGTTATCCCGAGAGATCCATGCAATGATCTCTTGCTGTCTTCTCTGTCAAGATTGCACAGTTGTACTTGA
CircID chr22:46362443|46362754
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MTKLVPQQIKGGKYVSSGAKTKRLEALQLPSARK
Nucleotide Sequence TTGACGAAACTGGTGCCCCAGCAGATCAAAGGTGGGAAATACGTCAGCAGTGGGGCTAAAACCAAGCGGCTAGAAGCCCTACAGCTGCCTTCGGCCAGGAAGTGA
CircID chr22:46362443|46362754
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MTLLSREIHAMISCCLLCQDCTVVLESGMC
Nucleotide Sequence CTGACTTTGTTATCCCGAGAGATCCATGCAATGATCTCTTGCTGTCTTCTCTGTCAAGATTGCACAGTTGTACTTGAATCTGGCATGTGTTGA
CircID chr22:46362443|46362754
ORF Type ORF6
Protein Length 97
Nucleotide Length 291
Protein Sequence MAEGSCRASSRLVLAPLLTYFPPLICWGTSFVNTCQIQVQLCNLDREDSKRSLHGSLGITKSARMQYIYRLHLLRVPYKYIKVSPPFPHSEVILRQG
Nucleotide Sequence CTGGCCGAAGGCAGCTGTAGGGCTTCTAGCCGCTTGGTTTTAGCCCCACTGCTGACGTATTTCCCACCTTTGATCTGCTGGGGCACCAGTTTCGTCAACACATGCCAGATTCAAGTACAACTGTGCAATCTTGACAGAGAAGACAGCAAGAGATCATTGCATGGATCTCTCGGGATAACAAAGTCAGCACGAATGCAATATATATACAGGTTGCACCTCCTCAGAGTCCCATACAAATATATAAAAGTATCTCCACCTTTCCCACATAGCGAAGTGATTTTAAGACAAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab