CircRNA Information

General Information
circRNA Basic Information
CircID chr22:49961139|49961465
Strand +
CircType exon
Host Gene ENSG00000198355.4;
Algorism CIRI2;
Sequence CTCCAGGGGCACGGTCGCGCCGCCCAGGCTGCCCCACTCGGTCACCCGCTCCTTCACCACGTGCTTCACAGCCACCTGCGGAGACGCGGGGGTCAGGCCGGGCCAAGCGAGGCGCAAGGCGCGCGAGAAACCCGGGCCCGCCCGGCGGTCCGACTCACCGGGAGCCCGTCGGCGATGCGGCTACCCGCGTAGACCGTGCCGAAGCCGCCGCTACCCAGCACGGCGCCCACCTGGTACGCCTTCTCGAAGCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:49961139|49961465 hsa-miR-328-5p 0 0 1
chr22:49961139|49961465 hsa-miR-328-3p 0 0 1
chr22:49961139|49961465 hsa-miR-564 0 1 1
chr22:49961139|49961465 hsa-miR-661 1 1 1
chr22:49961139|49961465 hsa-miR-541-5p 0 0 1
chr22:49961139|49961465 hsa-miR-541-3p 0 0 1
chr22:49961139|49961465 hsa-miR-1234-3p 0 0 1
chr22:49961139|49961465 hsa-miR-1252-5p 0 0 1
chr22:49961139|49961465 hsa-miR-1252-3p 0 0 1
chr22:49961139|49961465 hsa-miR-1234 0 0 1
chr22:49961139|49961465 hsa-miR-486-3p 0 0 1
chr22:49961139|49961465 hsa-miR-654-5p 0 0 1
chr22:49961139|49961465 hsa-miR-331-3p 0 0 1
chr22:49961139|49961465 hsa-miR-886-3p 0 0 1
chr22:49961139|49961465 hsa-miR-612 1 0 0
chr22:49961139|49961465 hsa-miR-638 1 0 0
chr22:49961139|49961465 hsa-miR-663a 1 0 0
chr22:49961139|49961465 hsa-miR-663b 1 0 0
chr22:49961139|49961465 hsa-miR-1268a 1 0 0
chr22:49961139|49961465 hsa-miR-1469 1 0 0
chr22:49961139|49961465 hsa-miR-1538 0 1 0
chr22:49961139|49961465 hsa-miR-3937 1 0 0
chr22:49961139|49961465 hsa-miR-1268b 1 0 0
chr22:49961139|49961465 hsa-miR-4479 0 1 0
chr22:49961139|49961465 hsa-miR-4492 1 0 0
chr22:49961139|49961465 hsa-miR-3960 1 1 0
chr22:49961139|49961465 hsa-miR-4634 0 1 0
chr22:49961139|49961465 hsa-miR-4721 1 0 0
chr22:49961139|49961465 hsa-miR-4767 1 0 0
chr22:49961139|49961465 hsa-miR-4785 0 1 0
chr22:49961139|49961465 hsa-miR-6090 1 0 0
chr22:49961139|49961465 hsa-miR-6125 1 0 0
chr22:49961139|49961465 hsa-miR-6127 1 1 0
chr22:49961139|49961465 hsa-miR-7974 1 1 0
chr22:49961139|49961465 hsa-miR-9899 1 1 0
chr22:49961139|49961465 hsa-miR-12114 1 0 0
chr22:49961139|49961465 hsa-miR-12115 1 0 0
chr22:49961139|49961465 hsa-miR-4433b-3p 1 0 0
chr22:49961139|49961465 hsa-miR-4747-3p 0 1 0
chr22:49961139|49961465 hsa-miR-4433a-3p 1 0 0
chr22:49961139|49961465 hsa-miR-6861-5p 0 1 0
chr22:49961139|49961465 hsa-miR-4687-3p 1 0 0
chr22:49961139|49961465 hsa-miR-3622a-5p 1 0 0
chr22:49961139|49961465 hsa-miR-7114-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6880-5p 1 0 0
chr22:49961139|49961465 hsa-miR-7847-3p 1 0 0
chr22:49961139|49961465 hsa-miR-6741-5p 1 0 0
chr22:49961139|49961465 hsa-miR-7108-5p 1 0 0
chr22:49961139|49961465 hsa-miR-1292-5p 1 0 0
chr22:49961139|49961465 hsa-miR-23a-5p 0 1 0
chr22:49961139|49961465 hsa-miR-615-5p 1 0 0
chr22:49961139|49961465 hsa-miR-4783-3p 1 1 0
chr22:49961139|49961465 hsa-miR-1228-5p 0 1 0
chr22:49961139|49961465 hsa-miR-3677-3p 1 0 0
chr22:49961139|49961465 hsa-miR-4783-5p 0 1 0
chr22:49961139|49961465 hsa-miR-149-3p 1 0 0
chr22:49961139|49961465 hsa-miR-6789-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6886-5p 0 1 0
chr22:49961139|49961465 hsa-miR-4707-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6859-3p 0 1 0
chr22:49961139|49961465 hsa-miR-668-5p 0 1 0
chr22:49961139|49961465 hsa-miR-4750-3p 0 1 0
chr22:49961139|49961465 hsa-miR-124-3p 1 0 0
chr22:49961139|49961465 hsa-miR-10400-5p 1 1 0
chr22:49961139|49961465 hsa-miR-6769b-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6812-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6816-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6865-5p 0 1 0
chr22:49961139|49961465 hsa-miR-6743-5p 1 0 0
chr22:49961139|49961465 hsa-miR-6756-5p 1 1 0
chr22:49961139|49961465 hsa-miR-6815-5p 0 1 0
chr22:49961139|49961465 hsa-miR-6774-5p 0 1 0
chr22:49961139|49961465 hsa-miR-5196-5p 1 0 0
chr22:49961139|49961465 hsa-miR-10392-5p 1 1 0
chr22:49961139|49961465 hsa-miR-4632-5p 1 1 0
chr22:49961139|49961465 hsa-miR-4725-3p 1 0 0
chr22:49961139|49961465 hsa-miR-4745-3p 0 1 0
chr22:49961139|49961465 hsa-miR-4745-5p 1 1 0
chr22:49961139|49961465 hsa-miR-6846-5p 1 0 0
chr22:49961139|49961465 hsa-miR-3187-5p 1 0 0
chr22:49961139|49961465 hsa-miR-4758-5p 1 1 0
chr22:49961139|49961465 hsa-miR-6891-5p 1 0 0
chr22:49961139|49961465 hsa-miR-10400-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:49961139|49961465
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MRRRGGQAGPSEAQGARETRARPAVRLTGSPSAMRLPA
Nucleotide Sequence CTGCGGAGACGCGGGGGTCAGGCCGGGCCAAGCGAGGCGCAAGGCGCGCGAGAAACCCGGGCCCGCCCGGCGGTCCGACTCACCGGGAGCCCGTCGGCGATGCGGCTACCCGCGTAG
CircID chr22:49961139|49961465
ORF Type ORF2
Protein Length 75
Nucleotide Length 225
Protein Sequence MPHSVTRSFTTCFTATCGDAGVRPGQARRKAREKPGPARRSDSPGARRRCGYPRRPCRSRRYPARRPPGTPSRSS
Nucleotide Sequence CTGCCCCACTCGGTCACCCGCTCCTTCACCACGTGCTTCACAGCCACCTGCGGAGACGCGGGGGTCAGGCCGGGCCAAGCGAGGCGCAAGGCGCGCGAGAAACCCGGGCCCGCCCGGCGGTCCGACTCACCGGGAGCCCGTCGGCGATGCGGCTACCCGCGTAGACCGTGCCGAAGCCGCCGCTACCCAGCACGGCGCCCACCTGGTACGCCTTCTCGAAGCTCT
CircID chr22:49961139|49961465
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MGSGGFGTVYAGSRIADGLPVSRTAGRARVSRAPCASLGPA
Nucleotide Sequence CTGGGTAGCGGCGGCTTCGGCACGGTCTACGCGGGTAGCCGCATCGCCGACGGGCTCCCGGTGAGTCGGACCGCCGGGCGGGCCCGGGTTTCTCGCGCGCCTTGCGCCTCGCTTGGCCCGGCCTGA
CircID chr22:49961139|49961465
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MARPDPRVSAGGCEARGEGAGDRVGQPGRRDRAPG
Nucleotide Sequence TTGGCCCGGCCTGACCCCCGCGTCTCCGCAGGTGGCTGTGAAGCACGTGGTGAAGGAGCGGGTGACCGAGTGGGGCAGCCTGGGCGGCGCGACCGTGCCCCTGGA
CircID chr22:49961139|49961465
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MRLAWPGLTPASPQVAVKHVVKERVTEWGSLGGATVPLE
Nucleotide Sequence TTGCGCCTCGCTTGGCCCGGCCTGACCCCCGCGTCTCCGCAGGTGGCTGTGAAGCACGTGGTGAAGGAGCGGGTGACCGAGTGGGGCAGCCTGGGCGGCGCGACCGTGCCCCTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab