CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50218511|50218802
Strand +
CircType exon
Host Gene ENSG00000128159.10;
Algorism CIRI2;
Sequence CCCGCACGCCTCCAACCTCTCCCTCGCTCTCAAGTACCTGCCCGAGGTGTTTGCCCCCAACGCCCCGGATGTGCTGAGCTGCCTGGAGCTCAGGTACAAGGTCAGCAGCAGCCCTGGCCGCGGGGGATGGGACAGGGGCCTGCCTGCCTGTGGGATGCCTGCTGAGCCACGCCTCCTGGCAGGTGGACTGGCCTCTCAACATTGTCATCACCGAGGGCTGCGTGAGCAAGTACAGCGGCGTCTTCTCCTTCCTGCTGCAGCTGAAGCTCATGATGTGGGCGCTCAAGGACGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50218511|50218802 hsa-miR-107 0 0 1
chr22:50218511|50218802 hsa-miR-214-5p 0 0 1
chr22:50218511|50218802 hsa-miR-214-3p 0 0 1
chr22:50218511|50218802 hsa-miR-650 1 0 1
chr22:50218511|50218802 hsa-miR-665 1 1 1
chr22:50218511|50218802 hsa-miR-922 0 0 1
chr22:50218511|50218802 hsa-miR-940 1 1 1
chr22:50218511|50218802 hsa-miR-1178-5p 0 0 1
chr22:50218511|50218802 hsa-miR-1178-3p 0 0 1
chr22:50218511|50218802 hsa-miR-1253 0 0 1
chr22:50218511|50218802 hsa-miR-1275 1 0 1
chr22:50218511|50218802 hsa-miR-324-5p 0 1 1
chr22:50218511|50218802 hsa-miR-339-5p 0 0 1
chr22:50218511|50218802 hsa-miR-1184 0 0 1
chr22:50218511|50218802 hsa-miR-339-3p 0 1 1
chr22:50218511|50218802 hsa-miR-1207-3p 0 0 1
chr22:50218511|50218802 hsa-miR-188-3p 0 1 1
chr22:50218511|50218802 hsa-miR-556-5p 0 0 1
chr22:50218511|50218802 hsa-miR-628-5p 0 1 1
chr22:50218511|50218802 hsa-miR-409-3p 0 0 1
chr22:50218511|50218802 hsa-miR-455-3p 0 0 1
chr22:50218511|50218802 hsa-miR-103 0 0 1
chr22:50218511|50218802 hsa-miR-24 0 0 1
chr22:50218511|50218802 hsa-miR-768-5p 0 0 1
chr22:50218511|50218802 hsa-miR-484 0 1 0
chr22:50218511|50218802 hsa-miR-636 0 1 0
chr22:50218511|50218802 hsa-miR-637 1 0 0
chr22:50218511|50218802 hsa-miR-663a 1 0 0
chr22:50218511|50218802 hsa-miR-761 0 1 0
chr22:50218511|50218802 hsa-miR-765 1 0 0
chr22:50218511|50218802 hsa-miR-921 1 0 0
chr22:50218511|50218802 hsa-miR-1268a 1 0 0
chr22:50218511|50218802 hsa-miR-1538 1 1 0
chr22:50218511|50218802 hsa-miR-3141 1 0 0
chr22:50218511|50218802 hsa-miR-3197 1 0 0
chr22:50218511|50218802 hsa-miR-3665 1 0 0
chr22:50218511|50218802 hsa-miR-3937 1 0 0
chr22:50218511|50218802 hsa-miR-1268b 1 0 0
chr22:50218511|50218802 hsa-miR-4443 0 1 0
chr22:50218511|50218802 hsa-miR-4488 1 0 0
chr22:50218511|50218802 hsa-miR-4510 1 1 0
chr22:50218511|50218802 hsa-miR-4525 1 0 0
chr22:50218511|50218802 hsa-miR-4533 1 1 0
chr22:50218511|50218802 hsa-miR-4660 0 1 0
chr22:50218511|50218802 hsa-miR-4682 0 1 0
chr22:50218511|50218802 hsa-miR-4692 0 1 0
chr22:50218511|50218802 hsa-miR-4736 0 1 0
chr22:50218511|50218802 hsa-miR-4739 1 0 0
chr22:50218511|50218802 hsa-miR-5090 1 0 0
chr22:50218511|50218802 hsa-miR-5192 1 0 0
chr22:50218511|50218802 hsa-miR-5698 1 0 0
chr22:50218511|50218802 hsa-miR-6069 1 1 0
chr22:50218511|50218802 hsa-miR-6090 1 1 0
chr22:50218511|50218802 hsa-miR-6127 1 1 0
chr22:50218511|50218802 hsa-miR-6129 1 0 0
chr22:50218511|50218802 hsa-miR-6130 0 1 0
chr22:50218511|50218802 hsa-miR-6133 1 1 0
chr22:50218511|50218802 hsa-miR-6165 1 1 0
chr22:50218511|50218802 hsa-miR-8085 1 0 0
chr22:50218511|50218802 hsa-miR-9718 0 1 0
chr22:50218511|50218802 hsa-miR-12114 1 0 0
chr22:50218511|50218802 hsa-miR-93-3p 0 1 0
chr22:50218511|50218802 hsa-miR-4665-3p 1 0 0
chr22:50218511|50218802 hsa-miR-6765-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6825-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6720-5p 1 0 0
chr22:50218511|50218802 hsa-miR-210-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6799-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6510-5p 1 0 0
chr22:50218511|50218802 hsa-miR-7851-3p 1 0 0
chr22:50218511|50218802 hsa-miR-6089 1 0 0
chr22:50218511|50218802 hsa-miR-6880-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4695-5p 1 1 0
chr22:50218511|50218802 hsa-miR-6744-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6762-3p 0 1 0
chr22:50218511|50218802 hsa-miR-6727-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6806-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6721-5p 1 1 0
chr22:50218511|50218802 hsa-miR-197-5p 1 0 0
chr22:50218511|50218802 hsa-miR-7845-5p 1 0 0
chr22:50218511|50218802 hsa-miR-503-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6829-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6732-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6805-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6798-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6760-5p 1 1 0
chr22:50218511|50218802 hsa-miR-5006-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6786-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1226-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6784-5p 1 1 0
chr22:50218511|50218802 hsa-miR-4640-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4690-5p 0 1 0
chr22:50218511|50218802 hsa-miR-4787-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1266-3p 0 1 0
chr22:50218511|50218802 hsa-miR-4446-3p 0 1 0
chr22:50218511|50218802 hsa-miR-149-3p 1 0 0
chr22:50218511|50218802 hsa-miR-6789-5p 1 0 0
chr22:50218511|50218802 hsa-miR-7112-5p 1 1 0
chr22:50218511|50218802 hsa-miR-598-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6748-3p 0 1 0
chr22:50218511|50218802 hsa-miR-4433b-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6729-3p 0 1 0
chr22:50218511|50218802 hsa-miR-6780b-3p 0 1 0
chr22:50218511|50218802 hsa-miR-1207-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1233-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1273h-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4763-3p 1 0 0
chr22:50218511|50218802 hsa-miR-6778-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6816-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6870-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6775-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1343-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6743-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6756-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6803-5p 1 0 0
chr22:50218511|50218802 hsa-miR-10401-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1249-5p 1 1 0
chr22:50218511|50218802 hsa-miR-6779-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6780a-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6808-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6879-5p 1 0 0
chr22:50218511|50218802 hsa-miR-7111-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4728-5p 1 0 0
chr22:50218511|50218802 hsa-miR-5196-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6780b-5p 1 0 0
chr22:50218511|50218802 hsa-miR-1237-5p 1 0 0
chr22:50218511|50218802 hsa-miR-328-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4649-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4725-3p 1 1 0
chr22:50218511|50218802 hsa-miR-6729-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6794-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6883-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6831-5p 1 0 0
chr22:50218511|50218802 hsa-miR-939-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6731-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6758-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6876-5p 1 1 0
chr22:50218511|50218802 hsa-miR-6891-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4716-3p 1 0 0
chr22:50218511|50218802 hsa-miR-6785-5p 1 0 0
chr22:50218511|50218802 hsa-miR-4667-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6791-5p 1 0 0
chr22:50218511|50218802 hsa-miR-3928-5p 1 0 0
chr22:50218511|50218802 hsa-miR-3619-5p 0 1 0
chr22:50218511|50218802 hsa-miR-1301-5p 0 1 0
chr22:50218511|50218802 hsa-miR-6838-5p 1 0 0
chr22:50218511|50218802 hsa-miR-6834-3p 0 1 0
chr22:50218511|50218802 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:50218511|50218802
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPGAQVQGQQQPWPRGMGQGPACLWDAC
Nucleotide Sequence CTGCCTGGAGCTCAGGTACAAGGTCAGCAGCAGCCCTGGCCGCGGGGGATGGGACAGGGGCCTGCCTGCCTGTGGGATGCCTGCTGA
CircID chr22:50218511|50218802
ORF Type ORF2
Protein Length 85
Nucleotide Length 255
Protein Sequence MPEVFAPNAPDVLSCLELRYKVSSSPGRGGWDRGLPACGMPAEPRLLAGGLASQHCHHRGLREQVQRRLLLPAAAEAHDVGAQGR
Nucleotide Sequence CTGCCCGAGGTGTTTGCCCCCAACGCCCCGGATGTGCTGAGCTGCCTGGAGCTCAGGTACAAGGTCAGCAGCAGCCCTGGCCGCGGGGGATGGGACAGGGGCCTGCCTGCCTGTGGGATGCCTGCTGAGCCACGCCTCCTGGCAGGTGGACTGGCCTCTCAACATTGTCATCACCGAGGGCTGCGTGAGCAAGTACAGCGGCGTCTTCTCCTTCCTGCTGCAGCTGAAGCTCATGATGTGGGCGCTCAAGGACGT
CircID chr22:50218511|50218802
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MAAGDGTGACLPVGCLLSHASWQVDWPLNIVITEGCVSKYSGVFSFLLQLKLMMWALKD
Nucleotide Sequence CTGGCCGCGGGGGATGGGACAGGGGCCTGCCTGCCTGTGGGATGCCTGCTGAGCCACGCCTCCTGGCAGGTGGACTGGCCTCTCAACATTGTCATCACCGAGGGCTGCGTGAGCAAGTACAGCGGCGTCTTCTCCTTCCTGCTGCAGCTGAAGCTCATGATGTGGGCGCTCAAGGAC
CircID chr22:50218511|50218802
ORF Type ORF4
Protein Length 95
Nucleotide Length 285
Protein Sequence MSAHIMSFSCSRKEKTPLYLLTQPSVMTMLRGQSTCQEAWLSRHPTGRQAPVPSPAARAAADLVPELQAAQHIRGVGGKHLGQVLESEGEVGGVR
Nucleotide Sequence TTGAGCGCCCACATCATGAGCTTCAGCTGCAGCAGGAAGGAGAAGACGCCGCTGTACTTGCTCACGCAGCCCTCGGTGATGACAATGTTGAGAGGCCAGTCCACCTGCCAGGAGGCGTGGCTCAGCAGGCATCCCACAGGCAGGCAGGCCCCTGTCCCATCCCCCGCGGCCAGGGCTGCTGCTGACCTTGTACCTGAGCTCCAGGCAGCTCAGCACATCCGGGGCGTTGGGGGCAAACACCTCGGGCAGGTACTTGAGAGCGAGGGAGAGGTTGGAGGCGTGCGG
CircID chr22:50218511|50218802
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MSHPPRPGLLLTLYLSSRQLSTSGALGANTSGRYLRARERLEACG
Nucleotide Sequence CTGTCCCATCCCCCGCGGCCAGGGCTGCTGCTGACCTTGTACCTGAGCTCCAGGCAGCTCAGCACATCCGGGGCGTTGGGGGCAAACACCTCGGGCAGGTACTTGAGAGCGAGGGAGAGGTTGGAGGCGTGCGGG
CircID chr22:50218511|50218802
ORF Type ORF6
Protein Length 52
Nucleotide Length 159
Protein Sequence MQQEGEDAAVLAHAALGDDNVERPVHLPGGVAQQASHRQAGPCPIPRGQGCC
Nucleotide Sequence CTGCAGCAGGAAGGAGAAGACGCCGCTGTACTTGCTCACGCAGCCCTCGGTGATGACAATGTTGAGAGGCCAGTCCACCTGCCAGGAGGCGTGGCTCAGCAGGCATCCCACAGGCAGGCAGGCCCCTGTCCCATCCCCCGCGGCCAGGGCTGCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab