CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50245519|50245772
Strand +
CircType exon
Host Gene ENSG00000100429.16;
Algorism CIRI2;
Sequence CTCCTAGCCTAGGCCCTTCCTCTGTGGCCTCCCCAGAGGACGTCCAGGCCCTGATGTACCTGAGAGGGCAGCTGGAGCCTCAGTGGAAGATGTTGCAGGTGAGGCTGACTGCGGAGGCATGGCCCTGCCCTGGGGCCTGGCTCTGCCGCACAGATCGGTGGGGAGGGCAGGGCAGGGGAGTGCCCTGAACCAGCTCCAGCGCCGGAGGCCAACTGCGCGCCTCTTCTCGGCTCCTCCTGTAGTGCCATCCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50245519|50245772 hsa-miR-22-5p 0 0 1
chr22:50245519|50245772 hsa-miR-22-3p 0 0 1
chr22:50245519|50245772 hsa-miR-183-5p 0 0 1
chr22:50245519|50245772 hsa-miR-183-3p 0 0 1
chr22:50245519|50245772 hsa-miR-326 0 0 1
chr22:50245519|50245772 hsa-miR-637 0 0 1
chr22:50245519|50245772 hsa-miR-645 0 0 1
chr22:50245519|50245772 hsa-miR-766-5p 0 0 1
chr22:50245519|50245772 hsa-miR-766-3p 0 0 1
chr22:50245519|50245772 hsa-miR-765 0 1 1
chr22:50245519|50245772 hsa-miR-874-5p 0 0 1
chr22:50245519|50245772 hsa-miR-874-3p 0 0 1
chr22:50245519|50245772 hsa-miR-147b-5p 0 0 1
chr22:50245519|50245772 hsa-miR-147b-3p 0 0 1
chr22:50245519|50245772 hsa-miR-939-5p 0 0 1
chr22:50245519|50245772 hsa-miR-939-3p 0 0 1
chr22:50245519|50245772 hsa-miR-1253 0 0 1
chr22:50245519|50245772 hsa-miR-1266-5p 0 0 1
chr22:50245519|50245772 hsa-miR-1266-3p 0 0 1
chr22:50245519|50245772 hsa-miR-485-5p 0 0 1
chr22:50245519|50245772 hsa-miR-146b-3p 0 0 1
chr22:50245519|50245772 hsa-miR-331-3p 0 0 1
chr22:50245519|50245772 hsa-miR-1207-5p 0 0 1
chr22:50245519|50245772 hsa-miR-330-5p 0 0 1
chr22:50245519|50245772 hsa-miR-1280 0 0 1
chr22:50245519|50245772 hsa-miR-1254 0 0 1
chr22:50245519|50245772 hsa-miR-1185 0 0 1
chr22:50245519|50245772 hsa-miR-499-3p 0 0 1
chr22:50245519|50245772 hsa-miR-1469 1 0 0
chr22:50245519|50245772 hsa-miR-3135a 0 1 0
chr22:50245519|50245772 hsa-miR-3909 1 1 0
chr22:50245519|50245772 hsa-miR-3916 0 1 0
chr22:50245519|50245772 hsa-miR-3918 0 1 0
chr22:50245519|50245772 hsa-miR-4420 0 1 0
chr22:50245519|50245772 hsa-miR-3135b 0 1 0
chr22:50245519|50245772 hsa-miR-4476 0 1 0
chr22:50245519|50245772 hsa-miR-4487 0 1 0
chr22:50245519|50245772 hsa-miR-4537 0 1 0
chr22:50245519|50245772 hsa-miR-4739 1 1 0
chr22:50245519|50245772 hsa-miR-8089 0 1 0
chr22:50245519|50245772 hsa-miR-18a-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6747-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6836-3p 0 1 0
chr22:50245519|50245772 hsa-miR-3150a-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6825-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6089 1 0 0
chr22:50245519|50245772 hsa-miR-4755-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6820-5p 0 1 0
chr22:50245519|50245772 hsa-miR-3189-5p 1 0 0
chr22:50245519|50245772 hsa-miR-6787-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6845-3p 0 1 0
chr22:50245519|50245772 hsa-miR-3605-5p 0 1 0
chr22:50245519|50245772 hsa-miR-659-3p 0 1 0
chr22:50245519|50245772 hsa-miR-2467-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6874-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6728-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6735-3p 1 0 0
chr22:50245519|50245772 hsa-miR-4763-5p 0 1 0
chr22:50245519|50245772 hsa-miR-3127-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6749-5p 1 0 0
chr22:50245519|50245772 hsa-miR-6789-5p 1 0 0
chr22:50245519|50245772 hsa-miR-7112-5p 1 1 0
chr22:50245519|50245772 hsa-miR-6895-5p 0 1 0
chr22:50245519|50245772 hsa-miR-423-5p 0 1 0
chr22:50245519|50245772 hsa-miR-4707-5p 1 0 0
chr22:50245519|50245772 hsa-miR-4772-3p 0 1 0
chr22:50245519|50245772 hsa-miR-4758-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6752-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6872-3p 0 1 0
chr22:50245519|50245772 hsa-miR-1296-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6508-3p 0 1 0
chr22:50245519|50245772 hsa-miR-4649-3p 0 1 0
chr22:50245519|50245772 hsa-miR-4717-5p 0 1 0
chr22:50245519|50245772 hsa-miR-3173-5p 0 1 0
chr22:50245519|50245772 hsa-miR-4763-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6775-5p 1 0 0
chr22:50245519|50245772 hsa-miR-7107-5p 1 0 0
chr22:50245519|50245772 hsa-miR-6879-5p 0 1 0
chr22:50245519|50245772 hsa-miR-4685-3p 0 1 0
chr22:50245519|50245772 hsa-miR-1915-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6780b-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6836-5p 0 1 0
chr22:50245519|50245772 hsa-miR-328-5p 1 0 0
chr22:50245519|50245772 hsa-miR-4685-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6735-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6858-5p 1 0 0
chr22:50245519|50245772 hsa-miR-6799-3p 0 1 0
chr22:50245519|50245772 hsa-miR-7843-5p 1 1 0
chr22:50245519|50245772 hsa-miR-6877-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6876-5p 0 1 0
chr22:50245519|50245772 hsa-miR-4667-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6862-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6805-3p 1 1 0
chr22:50245519|50245772 hsa-miR-6810-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6829-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6775-3p 0 1 0
chr22:50245519|50245772 hsa-miR-483-3p 0 1 0
chr22:50245519|50245772 hsa-miR-6859-5p 0 1 0
chr22:50245519|50245772 hsa-miR-6744-3p 1 0 0
chr22:50245519|50245772 hsa-miR-33b-3p 1 0 0
chr22:50245519|50245772 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:50245519|50245772
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MRRHGPALGPGSAAQIGGEGRAGECPEPAPAPEANCAPLLGSSCSAIL
Nucleotide Sequence CTGCGGAGGCATGGCCCTGCCCTGGGGCCTGGCTCTGCCGCACAGATCGGTGGGGAGGGCAGGGCAGGGGAGTGCCCTGAACCAGCTCCAGCGCCGGAGGCCAACTGCGCGCCTCTTCTCGGCTCCTCCTGTAGTGCCATCCTC
CircID chr22:50245519|50245772
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MALPWGLALPHRSVGRAGQGSALNQLQRRRPTARLFSAPPVVPSS
Nucleotide Sequence ATGGCCCTGCCCTGGGGCCTGGCTCTGCCGCACAGATCGGTGGGGAGGGCAGGGCAGGGGAGTGCCCTGAACCAGCTCCAGCGCCGGAGGCCAACTGCGCGCCTCTTCTCGGCTCCTCCTGTAGTGCCATCCTCA
CircID chr22:50245519|50245772
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MMYLRGQLEPQWKMLQVRLTAEAWPCPGAWLCRTDRWGGQGRGVP
Nucleotide Sequence CTGATGTACCTGAGAGGGCAGCTGGAGCCTCAGTGGAAGATGTTGCAGGTGAGGCTGACTGCGGAGGCATGGCCCTGCCCTGGGGCCTGGCTCTGCCGCACAGATCGGTGGGGAGGGCAGGGCAGGGGAGTGCCCTGA
CircID chr22:50245519|50245772
ORF Type ORF4
Protein Length 79
Nucleotide Length 240
Protein Sequence MALQEEPRRGAQLASGAGAGSGHSPALPSPPICAAEPGPRAGPCLRSQPHLQHLPLRLQLPSQVHQGLDVLWGGHRGRA
Nucleotide Sequence ATGGCACTACAGGAGGAGCCGAGAAGAGGCGCGCAGTTGGCCTCCGGCGCTGGAGCTGGTTCAGGGCACTCCCCTGCCCTGCCCTCCCCACCGATCTGTGCGGCAGAGCCAGGCCCCAGGGCAGGGCCATGCCTCCGCAGTCAGCCTCACCTGCAACATCTTCCACTGAGGCTCCAGCTGCCCTCTCAGGTACATCAGGGCCTGGACGTCCTCTGGGGAGGCCACAGAGGAAGGGCCTAG
CircID chr22:50245519|50245772
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MELVQGTPLPCPPHRSVRQSQAPGQGHASAVSLTCNIFH
Nucleotide Sequence CTGGAGCTGGTTCAGGGCACTCCCCTGCCCTGCCCTCCCCACCGATCTGTGCGGCAGAGCCAGGCCCCAGGGCAGGGCCATGCCTCCGCAGTCAGCCTCACCTGCAACATCTTCCACTGA
CircID chr22:50245519|50245772
ORF Type ORF6
Protein Length 49
Nucleotide Length 150
Protein Sequence MCGRARPQGRAMPPQSASPATSSTEAPAALSGTSGPGRPLGRPQRKGLG
Nucleotide Sequence CTGTGCGGCAGAGCCAGGCCCCAGGGCAGGGCCATGCCTCCGCAGTCAGCCTCACCTGCAACATCTTCCACTGAGGCTCCAGCTGCCCTCTCAGGTACATCAGGGCCTGGACGTCCTCTGGGGAGGCCACAGAGGAAGGGCCTAGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab