CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50250788|50251093
Strand +
CircType exon
Host Gene ENSG00000100429.16;
Algorism CIRI2;
Sequence AGGCAGTGGCAGGCACCACTAGCGAGGGCGTTTGGGAACCCAGGGTGACCACGGCGCAGCCATGGGGACCGCGCTTGTGTACCATGAGGACATGACGGCCACCCGGCTGCTCTGGGACGAGTAAGTGGGACCTGGCCGAGGTGGGGTGCGGGGAGGGACCTCTGAACTGAGCTCCTCATCTGCCCCAGCCCCGAGTGCGAGATCGAGCGTCCTGAGCGCCTGACCGCAGCCCTGGATCGCCTGCGGCAGCGCGGCCTGGAACAGAGGTGTCTGCGGTTGTCAGCCCGCGAGGCCTCGGAAGAGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50250788|50251093 hsa-miR-604 0 1 1
chr22:50250788|50251093 hsa-miR-647 0 0 1
chr22:50250788|50251093 hsa-miR-708-5p 0 0 1
chr22:50250788|50251093 hsa-miR-708-3p 0 0 1
chr22:50250788|50251093 hsa-miR-1236-5p 0 0 1
chr22:50250788|50251093 hsa-miR-1236-3p 0 0 1
chr22:50250788|50251093 hsa-miR-140-5p 0 0 1
chr22:50250788|50251093 hsa-miR-486-3p 0 1 1
chr22:50250788|50251093 hsa-miR-1224-3p 0 0 1
chr22:50250788|50251093 hsa-miR-28-5p 0 1 1
chr22:50250788|50251093 hsa-miR-550 0 0 1
chr22:50250788|50251093 hsa-miR-549 0 0 1
chr22:50250788|50251093 hsa-miR-661 1 0 0
chr22:50250788|50251093 hsa-miR-762 1 1 0
chr22:50250788|50251093 hsa-miR-1260a 0 1 0
chr22:50250788|50251093 hsa-miR-2278 0 1 0
chr22:50250788|50251093 hsa-miR-3132 1 1 0
chr22:50250788|50251093 hsa-miR-3139 0 1 0
chr22:50250788|50251093 hsa-miR-3907 1 0 0
chr22:50250788|50251093 hsa-miR-3937 1 0 0
chr22:50250788|50251093 hsa-miR-4492 1 0 0
chr22:50250788|50251093 hsa-miR-4498 1 1 0
chr22:50250788|50251093 hsa-miR-4508 0 1 0
chr22:50250788|50251093 hsa-miR-4526 1 0 0
chr22:50250788|50251093 hsa-miR-4656 1 1 0
chr22:50250788|50251093 hsa-miR-4688 0 1 0
chr22:50250788|50251093 hsa-miR-4734 1 0 0
chr22:50250788|50251093 hsa-miR-4741 1 0 0
chr22:50250788|50251093 hsa-miR-4767 1 0 0
chr22:50250788|50251093 hsa-miR-5193 0 1 0
chr22:50250788|50251093 hsa-miR-5787 1 1 0
chr22:50250788|50251093 hsa-miR-7706 1 0 0
chr22:50250788|50251093 hsa-miR-8089 1 0 0
chr22:50250788|50251093 hsa-miR-9901 1 0 0
chr22:50250788|50251093 hsa-miR-4731-5p 0 1 0
chr22:50250788|50251093 hsa-miR-6840-3p 1 0 0
chr22:50250788|50251093 hsa-miR-6892-3p 0 1 0
chr22:50250788|50251093 hsa-miR-6881-3p 0 1 0
chr22:50250788|50251093 hsa-miR-24-3p 0 1 0
chr22:50250788|50251093 hsa-miR-6727-5p 1 1 0
chr22:50250788|50251093 hsa-miR-23b-5p 0 1 0
chr22:50250788|50251093 hsa-miR-3189-5p 0 1 0
chr22:50250788|50251093 hsa-miR-423-3p 0 1 0
chr22:50250788|50251093 hsa-miR-877-3p 0 1 0
chr22:50250788|50251093 hsa-miR-7855-5p 1 0 0
chr22:50250788|50251093 hsa-miR-3934-3p 1 1 0
chr22:50250788|50251093 hsa-miR-1343-3p 1 0 0
chr22:50250788|50251093 hsa-miR-3944-3p 1 0 0
chr22:50250788|50251093 hsa-miR-6784-5p 0 1 0
chr22:50250788|50251093 hsa-miR-6894-3p 0 1 0
chr22:50250788|50251093 hsa-miR-4640-5p 1 0 0
chr22:50250788|50251093 hsa-miR-7113-3p 0 1 0
chr22:50250788|50251093 hsa-miR-4690-5p 1 1 0
chr22:50250788|50251093 hsa-miR-889-5p 0 1 0
chr22:50250788|50251093 hsa-miR-3677-3p 1 0 0
chr22:50250788|50251093 hsa-miR-6749-5p 1 0 0
chr22:50250788|50251093 hsa-miR-6886-5p 1 1 0
chr22:50250788|50251093 hsa-miR-5000-5p 0 1 0
chr22:50250788|50251093 hsa-miR-1180-5p 1 0 0
chr22:50250788|50251093 hsa-miR-6865-3p 1 0 0
chr22:50250788|50251093 hsa-miR-6501-3p 0 1 0
chr22:50250788|50251093 hsa-miR-2277-5p 1 1 0
chr22:50250788|50251093 hsa-miR-3124-5p 0 1 0
chr22:50250788|50251093 hsa-miR-3670 0 1 0
chr22:50250788|50251093 hsa-miR-3620-3p 1 1 0
chr22:50250788|50251093 hsa-miR-6734-3p 0 1 0
chr22:50250788|50251093 hsa-miR-3156-3p 0 1 0
chr22:50250788|50251093 hsa-miR-5587-5p 0 1 0
chr22:50250788|50251093 hsa-miR-550b-3p 0 1 0
chr22:50250788|50251093 hsa-miR-6816-5p 1 0 0
chr22:50250788|50251093 hsa-miR-6775-5p 1 0 0
chr22:50250788|50251093 hsa-miR-1343-5p 1 0 0
chr22:50250788|50251093 hsa-miR-5001-5p 1 1 0
chr22:50250788|50251093 hsa-miR-6813-5p 1 1 0
chr22:50250788|50251093 hsa-miR-1915-3p 1 0 0
chr22:50250788|50251093 hsa-miR-3620-5p 1 0 0
chr22:50250788|50251093 hsa-miR-4685-5p 1 1 0
chr22:50250788|50251093 hsa-miR-939-5p 1 0 0
chr22:50250788|50251093 hsa-miR-6511b-5p 0 1 0
chr22:50250788|50251093 hsa-miR-1271-3p 0 1 0
chr22:50250788|50251093 hsa-miR-10398-3p 1 1 0
chr22:50250788|50251093 hsa-miR-6727-3p 0 1 0
chr22:50250788|50251093 hsa-miR-4731-3p 0 1 0
chr22:50250788|50251093 hsa-miR-6837-5p 0 1 0
chr22:50250788|50251093 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50250788|50251093
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MTAALDRLRQRGLEQRCLRLSAREASEEE
Nucleotide Sequence CTGACCGCAGCCCTGGATCGCCTGCGGCAGCGCGGCCTGGAACAGAGGTGTCTGCGGTTGTCAGCCCGCGAGGCCTCGGAAGAGGAG
CircID chr22:50250788|50251093
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MGTQGDHGAAMGTALVYHEDMTATRLLWDE
Nucleotide Sequence TTGGGAACCCAGGGTGACCACGGCGCAGCCATGGGGACCGCGCTTGTGTACCATGAGGACATGACGGCCACCCGGCTGCTCTGGGACGAGTAA
CircID chr22:50250788|50251093
ORF Type ORF3
Protein Length 81
Nucleotide Length 246
Protein Sequence MFQAALPQAIQGCGQALRTLDLALGAGADEELSSEVPPRTPPRPGPTYSSQSSRVAVMSSWYTSAVPMAAPWSPWVPKRPR
Nucleotide Sequence CTGTTCCAGGCCGCGCTGCCGCAGGCGATCCAGGGCTGCGGTCAGGCGCTCAGGACGCTCGATCTCGCACTCGGGGCTGGGGCAGATGAGGAGCTCAGTTCAGAGGTCCCTCCCCGCACCCCACCTCGGCCAGGTCCCACTTACTCGTCCCAGAGCAGCCGGGTGGCCGTCATGTCCTCATGGTACACAAGCGCGGTCCCCATGGCTGCGCCGTGGTCACCCTGGGTTCCCAAACGCCCTCGCTAG
CircID chr22:50250788|50251093
ORF Type ORF4
Protein Length 62
Nucleotide Length 186
Protein Sequence MGQMRSSVQRSLPAPHLGQVPLTRPRAAGWPSCPHGTQARSPWLRRGHPGFPNALASGACHC
Nucleotide Sequence CTGGGGCAGATGAGGAGCTCAGTTCAGAGGTCCCTCCCCGCACCCCACCTCGGCCAGGTCCCACTTACTCGTCCCAGAGCAGCCGGGTGGCCGTCATGTCCTCATGGTACACAAGCGCGGTCCCCATGGCTGCGCCGTGGTCACCCTGGGTTCCCAAACGCCCTCGCTAGTGGTGCCTGCCACTGC
CircID chr22:50250788|50251093
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MTTADTSVPGRAAAGDPGLRSGAQDARSRTRGWGR
Nucleotide Sequence CTGACAACCGCAGACACCTCTGTTCCAGGCCGCGCTGCCGCAGGCGATCCAGGGCTGCGGTCAGGCGCTCAGGACGCTCGATCTCGCACTCGGGGCTGGGGCAGATGA
CircID chr22:50250788|50251093
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MVHKRGPHGCAVVTLGSQTPSLVVPATA
Nucleotide Sequence ATGGTACACAAGCGCGGTCCCCATGGCTGCGCCGTGGTCACCCTGGGTTCCCAAACGCCCTCGCTAGTGGTGCCTGCCACTGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab