CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50253211|50253368
Strand +
CircType exon
Host Gene ENSG00000188130.12;
Algorism CIRI2;
Sequence CACCTTCACCTTCCACCTGAGAGGGGACTCTCGTTGCCACCTTGACCTTGGCTGGGGCTTGCATCCCAAGGCATCCATCAGAGCAGACGCCCGGGTTCCATGGACCCTCCTCCCCACGGCCATGCCTCTGCTCTTGGGCGCCCATCATGGAGGAGCAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50253211|50253368 hsa-miR-335-5p 0 0 1
chr22:50253211|50253368 hsa-miR-335-3p 0 0 1
chr22:50253211|50253368 hsa-miR-493-5p 0 0 1
chr22:50253211|50253368 hsa-miR-493-3p 0 0 1
chr22:50253211|50253368 hsa-miR-765 0 0 1
chr22:50253211|50253368 hsa-miR-891a-5p 0 0 1
chr22:50253211|50253368 hsa-miR-891a-3p 0 0 1
chr22:50253211|50253368 hsa-miR-939-5p 0 0 1
chr22:50253211|50253368 hsa-miR-939-3p 0 0 1
chr22:50253211|50253368 hsa-miR-1266-5p 0 0 1
chr22:50253211|50253368 hsa-miR-1266-3p 0 0 1
chr22:50253211|50253368 hsa-miR-125a-3p 0 0 1
chr22:50253211|50253368 hsa-miR-491-5p 0 0 1
chr22:50253211|50253368 hsa-miR-532-5p 0 1 1
chr22:50253211|50253368 hsa-miR-767-3p 0 0 1
chr22:50253211|50253368 hsa-miR-769-3p 0 0 1
chr22:50253211|50253368 hsa-miR-450b-3p 0 0 1
chr22:50253211|50253368 hsa-miR-1268a 1 0 0
chr22:50253211|50253368 hsa-miR-2278 0 1 0
chr22:50253211|50253368 hsa-miR-1268b 1 0 0
chr22:50253211|50253368 hsa-miR-4468 0 1 0
chr22:50253211|50253368 hsa-miR-3972 1 0 0
chr22:50253211|50253368 hsa-miR-4706 1 0 0
chr22:50253211|50253368 hsa-miR-4739 1 1 0
chr22:50253211|50253368 hsa-miR-12114 0 1 0
chr22:50253211|50253368 hsa-miR-671-5p 1 0 0
chr22:50253211|50253368 hsa-miR-7106-5p 1 1 0
chr22:50253211|50253368 hsa-miR-6728-5p 1 1 0
chr22:50253211|50253368 hsa-miR-433-3p 0 1 0
chr22:50253211|50253368 hsa-miR-3180-3p 1 0 0
chr22:50253211|50253368 hsa-miR-3190-3p 0 1 0
chr22:50253211|50253368 hsa-miR-2467-3p 0 1 0
chr22:50253211|50253368 hsa-miR-5006-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6786-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6772-3p 0 1 0
chr22:50253211|50253368 hsa-miR-7109-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6771-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6513-5p 0 1 0
chr22:50253211|50253368 hsa-miR-6826-3p 0 1 0
chr22:50253211|50253368 hsa-miR-6865-5p 0 1 0
chr22:50253211|50253368 hsa-miR-6775-5p 1 0 0
chr22:50253211|50253368 hsa-miR-1343-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6737-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6756-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6803-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6815-5p 0 1 0
chr22:50253211|50253368 hsa-miR-6819-5p 1 1 0
chr22:50253211|50253368 hsa-miR-6751-5p 1 0 0
chr22:50253211|50253368 hsa-miR-328-5p 1 0 0
chr22:50253211|50253368 hsa-miR-4632-5p 1 0 0
chr22:50253211|50253368 hsa-miR-6735-5p 1 0 0
chr22:50253211|50253368 hsa-miR-4691-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50253211|50253368
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MGLASQGIHQSRRPGSMDPPPHGHASALGRPSWRS
Nucleotide Sequence CTGGGGCTTGCATCCCAAGGCATCCATCAGAGCAGACGCCCGGGTTCCATGGACCCTCCTCCCCACGGCCATGCCTCTGCTCTTGGGCGCCCATCATGGAGGAGC
CircID chr22:50253211|50253368
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MRGDSRCHLDLGWGLHPKASIRADARVPWTLLPTAMPLLLGAHHGGA
Nucleotide Sequence CTGAGAGGGGACTCTCGTTGCCACCTTGACCTTGGCTGGGGCTTGCATCCCAAGGCATCCATCAGAGCAGACGCCCGGGTTCCATGGACCCTCCTCCCCACGGCCATGCCTCTGCTCTTGGGCGCCCATCATGGAGGAGCA
CircID chr22:50253211|50253368
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MTLAGACIPRHPSEQTPGFHGPSSPRPCLCSWAPIMEEH
Nucleotide Sequence TTGACCTTGGCTGGGGCTTGCATCCCAAGGCATCCATCAGAGCAGACGCCCGGGTTCCATGGACCCTCCTCCCCACGGCCATGCCTCTGCTCTTGGGCGCCCATCATGGAGGAGCAC
CircID chr22:50253211|50253368
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MMGAQEQRHGRGEEGPWNPGVCSDGCLGMQAPAKVKVATRVPSQVEGEG
Nucleotide Sequence ATGATGGGCGCCCAAGAGCAGAGGCATGGCCGTGGGGAGGAGGGTCCATGGAACCCGGGCGTCTGCTCTGATGGATGCCTTGGGATGCAAGCCCCAGCCAAGGTCAAGGTGGCAACGAGAGTCCCCTCTCAGGTGGAAGGTGAAGGT
CircID chr22:50253211|50253368
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MAVGRRVHGTRASALMDALGCKPQPRSRWQRESPLRWKVKV
Nucleotide Sequence ATGGCCGTGGGGAGGAGGGTCCATGGAACCCGGGCGTCTGCTCTGATGGATGCCTTGGGATGCAAGCCCCAGCCAAGGTCAAGGTGGCAACGAGAGTCCCCTCTCAGGTGGAAGGTGAAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab