CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50277591|50277880
Strand -
CircType exon
Host Gene ENSG00000196576.13;
Algorism CIRI2;
Sequence GCGGCTCAGCTTATGCTCCGTGCGCGTGCAGGCATCCATGAAGGTCTGCGCGATGACTGACAGCGAGGCGTCCACCACCTCGTGGACATGCACGTCAAAGATGAAGTGGGGGTTCTTGAGGATGTTCACCCAGAACCGGAGCGGTAAGCTGAGGCAGAGCAGCAGGGAATGAGAGCCGGGGCTGGGCCGCGGGGTGGGTGTGGAGCCTCCCAAGTGAGAGGCGGAGCCGGGGCTGGGCCGCGGGGTGGGTGTGGAGCCTCACCTGTTCGTCTTCCAGATGTGGATGGTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50277591|50277880 hsa-miR-205-5p 0 0 1
chr22:50277591|50277880 hsa-miR-205-3p 0 0 1
chr22:50277591|50277880 hsa-miR-223-5p 0 0 1
chr22:50277591|50277880 hsa-miR-223-3p 0 0 1
chr22:50277591|50277880 hsa-miR-370-5p 0 0 1
chr22:50277591|50277880 hsa-miR-370-3p 0 0 1
chr22:50277591|50277880 hsa-miR-517-5p 0 0 1
chr22:50277591|50277880 hsa-miR-517b-3p 0 0 1
chr22:50277591|50277880 hsa-miR-552-5p 0 0 1
chr22:50277591|50277880 hsa-miR-552-3p 0 0 1
chr22:50277591|50277880 hsa-miR-1299 0 1 1
chr22:50277591|50277880 hsa-miR-1262 0 1 1
chr22:50277591|50277880 hsa-miR-125a-3p 0 1 1
chr22:50277591|50277880 hsa-miR-485-5p 0 0 1
chr22:50277591|50277880 hsa-miR-671-3p 1 0 1
chr22:50277591|50277880 hsa-miR-490-5p 0 0 1
chr22:50277591|50277880 hsa-miR-875-3p 0 0 1
chr22:50277591|50277880 hsa-miR-548b-3p 0 1 1
chr22:50277591|50277880 hsa-miR-1274a 0 0 1
chr22:50277591|50277880 hsa-miR-7 0 0 1
chr22:50277591|50277880 hsa-miR-720 0 0 1
chr22:50277591|50277880 hsa-miR-484 0 1 0
chr22:50277591|50277880 hsa-miR-663b 1 1 0
chr22:50277591|50277880 hsa-miR-1204 0 1 0
chr22:50277591|50277880 hsa-miR-1538 1 0 0
chr22:50277591|50277880 hsa-miR-3165 1 0 0
chr22:50277591|50277880 hsa-miR-3939 1 1 0
chr22:50277591|50277880 hsa-miR-3943 1 0 0
chr22:50277591|50277880 hsa-miR-4706 1 0 0
chr22:50277591|50277880 hsa-miR-6071 1 0 0
chr22:50277591|50277880 hsa-miR-6075 0 1 0
chr22:50277591|50277880 hsa-miR-6134 0 1 0
chr22:50277591|50277880 hsa-miR-12125 0 1 0
chr22:50277591|50277880 hsa-miR-12126 0 1 0
chr22:50277591|50277880 hsa-miR-4747-3p 1 0 0
chr22:50277591|50277880 hsa-miR-152-5p 0 1 0
chr22:50277591|50277880 hsa-miR-3194-3p 1 1 0
chr22:50277591|50277880 hsa-miR-6836-3p 1 0 0
chr22:50277591|50277880 hsa-miR-149-5p 1 1 0
chr22:50277591|50277880 hsa-miR-6822-3p 1 0 0
chr22:50277591|50277880 hsa-miR-6720-5p 1 1 0
chr22:50277591|50277880 hsa-miR-766-3p 1 0 0
chr22:50277591|50277880 hsa-miR-3692-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6787-3p 0 1 0
chr22:50277591|50277880 hsa-miR-2467-5p 1 1 0
chr22:50277591|50277880 hsa-miR-6765-3p 1 0 0
chr22:50277591|50277880 hsa-miR-6728-3p 1 0 0
chr22:50277591|50277880 hsa-miR-30b-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6882-3p 1 0 0
chr22:50277591|50277880 hsa-miR-6788-3p 1 0 0
chr22:50277591|50277880 hsa-miR-4436b-5p 1 0 0
chr22:50277591|50277880 hsa-miR-6763-3p 1 0 0
chr22:50277591|50277880 hsa-miR-5001-3p 1 1 0
chr22:50277591|50277880 hsa-miR-7113-3p 1 0 0
chr22:50277591|50277880 hsa-miR-4717-3p 1 0 0
chr22:50277591|50277880 hsa-miR-5196-3p 0 1 0
chr22:50277591|50277880 hsa-miR-4446-5p 1 0 0
chr22:50277591|50277880 hsa-miR-146b-3p 1 0 0
chr22:50277591|50277880 hsa-miR-6769a-3p 1 0 0
chr22:50277591|50277880 hsa-miR-4707-5p 1 1 0
chr22:50277591|50277880 hsa-miR-654-5p 1 0 0
chr22:50277591|50277880 hsa-miR-500a-5p 1 0 0
chr22:50277591|50277880 hsa-miR-6741-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6758-3p 1 1 0
chr22:50277591|50277880 hsa-miR-6859-3p 0 1 0
chr22:50277591|50277880 hsa-miR-1292-3p 1 0 0
chr22:50277591|50277880 hsa-miR-502-5p 1 0 0
chr22:50277591|50277880 hsa-miR-130b-5p 1 1 0
chr22:50277591|50277880 hsa-miR-3620-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6779-3p 0 1 0
chr22:50277591|50277880 hsa-miR-371b-3p 1 0 0
chr22:50277591|50277880 hsa-miR-1228-3p 1 1 0
chr22:50277591|50277880 hsa-miR-3689a-3p 0 1 0
chr22:50277591|50277880 hsa-miR-4745-3p 0 1 0
chr22:50277591|50277880 hsa-miR-10396a-3p 1 1 0
chr22:50277591|50277880 hsa-miR-10396b-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6791-5p 1 0 0
chr22:50277591|50277880 hsa-miR-6893-3p 1 1 0
chr22:50277591|50277880 hsa-miR-6784-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6862-3p 0 1 0
chr22:50277591|50277880 hsa-miR-6805-3p 0 1 0
chr22:50277591|50277880 hsa-miR-10392-3p 1 1 0
chr22:50277591|50277880 hsa-miR-4723-3p 1 0 0
chr22:50277591|50277880 hsa-miR-7114-3p 0 1 0
chr22:50277591|50277880 hsa-miR-4756-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:50277591|50277880
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MRAGAGPRGGCGASQVRGGAGAGPRGGCGASPVRLPDVDG
Nucleotide Sequence ATGAGAGCCGGGGCTGGGCCGCGGGGTGGGTGTGGAGCCTCCCAAGTGAGAGGCGGAGCCGGGGCTGGGCCGCGGGGTGGGTGTGGAGCCTCACCTGTTCGTCTTCCAGATGTGGATGGT
CircID chr22:50277591|50277880
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MKVCAMTDSEASTTSWTCTSKMKWGFLRMFTQNRSGKLRQSSRE
Nucleotide Sequence ATGAAGGTCTGCGCGATGACTGACAGCGAGGCGTCCACCACCTCGTGGACATGCACGTCAAAGATGAAGTGGGGGTTCTTGAGGATGTTCACCCAGAACCGGAGCGGTAAGCTGAGGCAGAGCAGCAGGGAATGA
CircID chr22:50277591|50277880
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MTCMSTRWWTPRCQSSRRPSWMPARARSIS
Nucleotide Sequence TTGACGTGCATGTCCACGAGGTGGTGGACGCCTCGCTGTCAGTCATCGCGCAGACCTTCATGGATGCCTGCACGCGCACGGAGCATAAGCTGA
CircID chr22:50277591|50277880
ORF Type ORF4
Protein Length 60
Nucleotide Length 183
Protein Sequence MEDEQVRLHTHPAAQPRLRLSLGRLHTHPAAQPRLSFPAALPQLTAPVLGEHPQEPPLHL
Nucleotide Sequence CTGGAAGACGAACAGGTGAGGCTCCACACCCACCCCGCGGCCCAGCCCCGGCTCCGCCTCTCACTTGGGAGGCTCCACACCCACCCCGCGGCCCAGCCCCGGCTCTCATTCCCTGCTGCTCTGCCTCAGCTTACCGCTCCGGTTCTGGGTGAACATCCTCAAGAACCCCCACTTCATCTTTGA
CircID chr22:50277591|50277880
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MGGSTPTPRPSPGSHSLLLCLSLPLRFWVNILKNPHFIFDVHVHEVVDASLSVIAQTFMDACTRTEHKLSR
Nucleotide Sequence TTGGGAGGCTCCACACCCACCCCGCGGCCCAGCCCCGGCTCTCATTCCCTGCTGCTCTGCCTCAGCTTACCGCTCCGGTTCTGGGTGAACATCCTCAAGAACCCCCACTTCATCTTTGACGTGCATGTCCACGAGGTGGTGGACGCCTCGCTGTCAGTCATCGCGCAGACCTTCATGGATGCCTGCACGCGCACGGAGCATAAGCTGAGCCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab