CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50278620|50278933
Strand -
CircType exon
Host Gene ENSG00000196576.13;
Algorism CIRI2;
Sequence GCGCTTCCACCGGCCCTCCCGCTGTGACGTCAGGTCCAGGTCCGACAGGATCTGCGCTGTGGAGCCCGGACGCCACTCTGTGGGAAGAGACAGCCCAGCTTGGGCCCCAGCCACCCAGGTTCCTCCCACTGCCCACCACTCCCATATGAGAAAGCTGGCCAGGCAGGATACCGCCCCAGGACACAGGCCAGGCACATGGGCGCCTGTGTGCAGACGGGCAGGGGCCGGCACTCACCCAGGACCACGCTGTCTGGCCTGGGCCAGCAGGAGCAGGGCTGCCCACGGTACACCTGGTCAATGATCTTCTCCTTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50278620|50278933 hsa-miR-34a-5p 0 0 1
chr22:50278620|50278933 hsa-miR-34a-3p 0 0 1
chr22:50278620|50278933 hsa-miR-370-5p 0 0 1
chr22:50278620|50278933 hsa-miR-370-3p 0 0 1
chr22:50278620|50278933 hsa-miR-449a 0 0 1
chr22:50278620|50278933 hsa-miR-492 0 1 1
chr22:50278620|50278933 hsa-miR-593-5p 0 0 1
chr22:50278620|50278933 hsa-miR-593-3p 0 0 1
chr22:50278620|50278933 hsa-miR-619-5p 0 0 1
chr22:50278620|50278933 hsa-miR-619-3p 0 0 1
chr22:50278620|50278933 hsa-miR-626 0 0 1
chr22:50278620|50278933 hsa-miR-631 0 1 1
chr22:50278620|50278933 hsa-miR-661 1 1 1
chr22:50278620|50278933 hsa-miR-449b-5p 0 0 1
chr22:50278620|50278933 hsa-miR-449b-3p 0 0 1
chr22:50278620|50278933 hsa-miR-541-5p 0 0 1
chr22:50278620|50278933 hsa-miR-541-3p 0 0 1
chr22:50278620|50278933 hsa-miR-1236-5p 0 0 1
chr22:50278620|50278933 hsa-miR-1236-3p 0 0 1
chr22:50278620|50278933 hsa-miR-1293 0 0 1
chr22:50278620|50278933 hsa-miR-1253 0 0 1
chr22:50278620|50278933 hsa-miR-1262 0 0 1
chr22:50278620|50278933 hsa-miR-1324 0 0 1
chr22:50278620|50278933 hsa-miR-671-5p 0 0 1
chr22:50278620|50278933 hsa-miR-490-3p 0 0 1
chr22:50278620|50278933 hsa-miR-654-5p 0 0 1
chr22:50278620|50278933 hsa-miR-188-3p 0 1 1
chr22:50278620|50278933 hsa-miR-455-5p 0 0 1
chr22:50278620|50278933 hsa-miR-34c-5p 0 0 1
chr22:50278620|50278933 hsa-miR-1260 0 0 1
chr22:50278620|50278933 hsa-miR-550 0 0 1
chr22:50278620|50278933 hsa-miR-1254 0 0 1
chr22:50278620|50278933 hsa-miR-371-3p 0 0 1
chr22:50278620|50278933 hsa-miR-608 1 0 0
chr22:50278620|50278933 hsa-miR-612 1 0 0
chr22:50278620|50278933 hsa-miR-637 1 0 0
chr22:50278620|50278933 hsa-miR-762 1 1 0
chr22:50278620|50278933 hsa-miR-1202 1 0 0
chr22:50278620|50278933 hsa-miR-1268a 1 0 0
chr22:50278620|50278933 hsa-miR-1538 1 1 0
chr22:50278620|50278933 hsa-miR-2861 1 0 0
chr22:50278620|50278933 hsa-miR-3147 1 0 0
chr22:50278620|50278933 hsa-miR-3176 0 1 0
chr22:50278620|50278933 hsa-miR-3181 1 0 0
chr22:50278620|50278933 hsa-miR-320e 0 1 0
chr22:50278620|50278933 hsa-miR-378c 0 1 0
chr22:50278620|50278933 hsa-miR-3661 0 1 0
chr22:50278620|50278933 hsa-miR-3714 1 0 0
chr22:50278620|50278933 hsa-miR-1268b 1 0 0
chr22:50278620|50278933 hsa-miR-378e 0 1 0
chr22:50278620|50278933 hsa-miR-4421 0 1 0
chr22:50278620|50278933 hsa-miR-4428 0 1 0
chr22:50278620|50278933 hsa-miR-4440 1 0 0
chr22:50278620|50278933 hsa-miR-4449 1 0 0
chr22:50278620|50278933 hsa-miR-378h 0 1 0
chr22:50278620|50278933 hsa-miR-4535 0 1 0
chr22:50278620|50278933 hsa-miR-4641 0 1 0
chr22:50278620|50278933 hsa-miR-4654 1 0 0
chr22:50278620|50278933 hsa-miR-4657 1 0 0
chr22:50278620|50278933 hsa-miR-4675 0 1 0
chr22:50278620|50278933 hsa-miR-4706 1 0 0
chr22:50278620|50278933 hsa-miR-4739 1 0 0
chr22:50278620|50278933 hsa-miR-4741 1 0 0
chr22:50278620|50278933 hsa-miR-5787 1 1 0
chr22:50278620|50278933 hsa-miR-6069 1 0 0
chr22:50278620|50278933 hsa-miR-6090 1 0 0
chr22:50278620|50278933 hsa-miR-6127 1 0 0
chr22:50278620|50278933 hsa-miR-6131 1 0 0
chr22:50278620|50278933 hsa-miR-6133 1 0 0
chr22:50278620|50278933 hsa-miR-6860 1 0 0
chr22:50278620|50278933 hsa-miR-9899 1 0 0
chr22:50278620|50278933 hsa-miR-10226 0 1 0
chr22:50278620|50278933 hsa-miR-12122 0 1 0
chr22:50278620|50278933 hsa-miR-4435 0 1 0
chr22:50278620|50278933 hsa-miR-4433b-3p 1 0 0
chr22:50278620|50278933 hsa-miR-128-1-5p 1 0 0
chr22:50278620|50278933 hsa-miR-4731-5p 1 1 0
chr22:50278620|50278933 hsa-miR-7155-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6747-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6765-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6861-5p 1 0 0
chr22:50278620|50278933 hsa-miR-7106-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6894-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1972 0 1 0
chr22:50278620|50278933 hsa-miR-210-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6799-5p 1 0 0
chr22:50278620|50278933 hsa-miR-3692-5p 0 1 0
chr22:50278620|50278933 hsa-miR-766-5p 0 1 0
chr22:50278620|50278933 hsa-miR-7851-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6875-3p 1 0 0
chr22:50278620|50278933 hsa-miR-3928-3p 0 1 0
chr22:50278620|50278933 hsa-miR-8069 1 0 0
chr22:50278620|50278933 hsa-miR-6776-5p 0 1 0
chr22:50278620|50278933 hsa-miR-6742-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6716-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6871-5p 1 1 0
chr22:50278620|50278933 hsa-miR-3180-3p 1 0 0
chr22:50278620|50278933 hsa-miR-6732-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6782-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6735-3p 0 1 0
chr22:50278620|50278933 hsa-miR-3934-3p 0 1 0
chr22:50278620|50278933 hsa-miR-1343-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6786-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6772-3p 0 1 0
chr22:50278620|50278933 hsa-miR-1909-5p 1 1 0
chr22:50278620|50278933 hsa-miR-3186-5p 0 1 0
chr22:50278620|50278933 hsa-miR-2277-3p 1 1 0
chr22:50278620|50278933 hsa-miR-1229-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1228-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6771-5p 1 0 0
chr22:50278620|50278933 hsa-miR-3677-3p 1 0 0
chr22:50278620|50278933 hsa-miR-4717-3p 1 0 0
chr22:50278620|50278933 hsa-miR-6749-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6818-3p 0 1 0
chr22:50278620|50278933 hsa-miR-4787-5p 1 0 0
chr22:50278620|50278933 hsa-miR-3690 0 1 0
chr22:50278620|50278933 hsa-miR-149-3p 1 1 0
chr22:50278620|50278933 hsa-miR-6824-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6742-3p 0 1 0
chr22:50278620|50278933 hsa-miR-4757-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6781-5p 0 1 0
chr22:50278620|50278933 hsa-miR-3190-5p 0 1 0
chr22:50278620|50278933 hsa-miR-1910-5p 0 1 0
chr22:50278620|50278933 hsa-miR-1296-5p 1 0 0
chr22:50278620|50278933 hsa-miR-371a-3p 0 1 0
chr22:50278620|50278933 hsa-miR-3173-5p 0 1 0
chr22:50278620|50278933 hsa-miR-6779-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6847-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6838-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6789-3p 0 1 0
chr22:50278620|50278933 hsa-miR-10400-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1233-5p 1 1 0
chr22:50278620|50278933 hsa-miR-4763-3p 1 0 0
chr22:50278620|50278933 hsa-miR-6769b-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6778-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6787-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6737-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6752-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6756-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6769a-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6803-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6819-5p 1 0 0
chr22:50278620|50278933 hsa-miR-7110-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1249-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6751-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6763-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6779-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6780a-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6797-5p 1 0 0
chr22:50278620|50278933 hsa-miR-7111-5p 1 0 0
chr22:50278620|50278933 hsa-miR-4728-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1237-5p 1 0 0
chr22:50278620|50278933 hsa-miR-1909-3p 1 0 0
chr22:50278620|50278933 hsa-miR-328-5p 1 0 0
chr22:50278620|50278933 hsa-miR-449c-5p 1 0 0
chr22:50278620|50278933 hsa-miR-4745-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6735-5p 0 1 0
chr22:50278620|50278933 hsa-miR-6883-5p 0 1 0
chr22:50278620|50278933 hsa-miR-3187-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6885-5p 1 0 0
chr22:50278620|50278933 hsa-miR-30c-1-3p 1 0 0
chr22:50278620|50278933 hsa-miR-6856-5p 1 0 0
chr22:50278620|50278933 hsa-miR-6799-3p 0 1 0
chr22:50278620|50278933 hsa-miR-1271-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6736-5p 0 1 0
chr22:50278620|50278933 hsa-miR-378a-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6785-5p 1 1 0
chr22:50278620|50278933 hsa-miR-6810-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6775-3p 0 1 0
chr22:50278620|50278933 hsa-miR-10392-3p 0 1 0
chr22:50278620|50278933 hsa-miR-6783-3p 0 1 0
chr22:50278620|50278933 hsa-miR-378d 0 1 0
chr22:50278620|50278933 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:50278620|50278933
ORF Type ORF1
Protein Length 87
Nucleotide Length 261
Protein Sequence MRCGARTPLCGKRQPSLGPSHPGSSHCPPLPYEKAGQAGYRPRTQARHMGACVQTGRGRHSPRTTLSGLGQQEQGCPRYTWSMIFSL
Nucleotide Sequence CTGCGCTGTGGAGCCCGGACGCCACTCTGTGGGAAGAGACAGCCCAGCTTGGGCCCCAGCCACCCAGGTTCCTCCCACTGCCCACCACTCCCATATGAGAAAGCTGGCCAGGCAGGATACCGCCCCAGGACACAGGCCAGGCACATGGGCGCCTGTGTGCAGACGGGCAGGGGCCGGCACTCACCCAGGACCACGCTGTCTGGCCTGGGCCAGCAGGAGCAGGGCTGCCCACGGTACACCTGGTCAATGATCTTCTCCTTG
CircID chr22:50278620|50278933
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MRKLARQDTAPGHRPGTWAPVCRRAGAGTHPGPRCLAWASRSRAAHGTPGQ
Nucleotide Sequence ATGAGAAAGCTGGCCAGGCAGGATACCGCCCCAGGACACAGGCCAGGCACATGGGCGCCTGTGTGCAGACGGGCAGGGGCCGGCACTCACCCAGGACCACGCTGTCTGGCCTGGGCCAGCAGGAGCAGGGCTGCCCACGGTACACCTGGTCAATGA
CircID chr22:50278620|50278933
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MWSPDATLWEETAQLGPQPPRFLPLPTTPI
Nucleotide Sequence CTGTGGAGCCCGGACGCCACTCTGTGGGAAGAGACAGCCCAGCTTGGGCCCCAGCCACCCAGGTTCCTCCCACTGCCCACCACTCCCATATGA
CircID chr22:50278620|50278933
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MCADGQGPALTQDHAVWPGPAGAGLPTVHLVNDLLLD
Nucleotide Sequence CTGTGTGCAGACGGGCAGGGGCCGGCACTCACCCAGGACCACGCTGTCTGGCCTGGGCCAGCAGGAGCAGGGCTGCCCACGGTACACCTGGTCAATGATCTTCTCCTTGAC
CircID chr22:50278620|50278933
ORF Type ORF5
Protein Length 69
Nucleotide Length 210
Protein Sequence MGECRPLPVCTQAPMCLACVLGRYPAWPAFSYGSGGQWEEPGWLGPKLGCLFPQSGVRAPQRRSCRTWT
Nucleotide Sequence CTGGGTGAGTGCCGGCCCCTGCCCGTCTGCACACAGGCGCCCATGTGCCTGGCCTGTGTCCTGGGGCGGTATCCTGCCTGGCCAGCTTTCTCATATGGGAGTGGTGGGCAGTGGGAGGAACCTGGGTGGCTGGGGCCCAAGCTGGGCTGTCTCTTCCCACAGAGTGGCGTCCGGGCTCCACAGCGCAGATCCTGTCGGACCTGGACCTGA
CircID chr22:50278620|50278933
ORF Type ORF6
Protein Length 99
Nucleotide Length 297
Protein Sequence MTRCTVGSPAPAGPGQTAWSWVSAGPCPSAHRRPCAWPVSWGGILPGQLSHMGVVGSGRNLGGWGPSWAVSSHRVASGLHSADPVGPGPDVTAGGPVEA
Nucleotide Sequence TTGACCAGGTGTACCGTGGGCAGCCCTGCTCCTGCTGGCCCAGGCCAGACAGCGTGGTCCTGGGTGAGTGCCGGCCCCTGCCCGTCTGCACACAGGCGCCCATGTGCCTGGCCTGTGTCCTGGGGCGGTATCCTGCCTGGCCAGCTTTCTCATATGGGAGTGGTGGGCAGTGGGAGGAACCTGGGTGGCTGGGGCCCAAGCTGGGCTGTCTCTTCCCACAGAGTGGCGTCCGGGCTCCACAGCGCAGATCCTGTCGGACCTGGACCTGACGTCACAGCGGGAGGGCCGGTGGAAGCG
CircID chr22:50278620|50278933
ORF Type ORF7
Protein Length 71
Nucleotide Length 213
Protein Sequence MHTGAHVPGLCPGAVSCLASFLIWEWWAVGGTWVAGAQAGLSLPTEWRPGSTAQILSDLDLTSQREGRWKR
Nucleotide Sequence CTGCACACAGGCGCCCATGTGCCTGGCCTGTGTCCTGGGGCGGTATCCTGCCTGGCCAGCTTTCTCATATGGGAGTGGTGGGCAGTGGGAGGAACCTGGGTGGCTGGGGCCCAAGCTGGGCTGTCTCTTCCCACAGAGTGGCGTCCGGGCTCCACAGCGCAGATCCTGTCGGACCTGGACCTGACGTCACAGCGGGAGGGCCGGTGGAAGCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab