CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50281380|50281628
Strand -
CircType exon
Host Gene ENSG00000196576.13;
Algorism CIRI2;
Sequence CGCGATGACGACCACCATGGGCACGATGACCAGCGGCAAGATGAGGCTGAGCGGCACGTCGCTCACCCGTGTGTCGTACTCCACGCGGCCCAGCACCCACTCGCGAGAGCCGAACTTCACCTGTGTGGGGGGCCGGGTTCAGCGCGGTCCCGTGGGGGCACCCCCCGCCAGTCCCCGCTCACGCACAATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50281380|50281628 hsa-miR-210-5p 0 0 1
chr22:50281380|50281628 hsa-miR-210-3p 0 0 1
chr22:50281380|50281628 hsa-miR-552-5p 0 0 1
chr22:50281380|50281628 hsa-miR-552-3p 0 0 1
chr22:50281380|50281628 hsa-miR-602 0 1 1
chr22:50281380|50281628 hsa-miR-147b-5p 0 0 1
chr22:50281380|50281628 hsa-miR-147b-3p 0 0 1
chr22:50281380|50281628 hsa-miR-125a-3p 1 1 1
chr22:50281380|50281628 hsa-miR-941 0 1 1
chr22:50281380|50281628 hsa-miR-876-3p 0 0 1
chr22:50281380|50281628 hsa-miR-342-5p 0 1 1
chr22:50281380|50281628 hsa-miR-323-5p 0 0 1
chr22:50281380|50281628 hsa-miR-663 0 0 1
chr22:50281380|50281628 hsa-miR-663a 1 1 0
chr22:50281380|50281628 hsa-miR-762 1 0 0
chr22:50281380|50281628 hsa-miR-3147 1 1 0
chr22:50281380|50281628 hsa-miR-3665 1 0 0
chr22:50281380|50281628 hsa-miR-3935 1 0 0
chr22:50281380|50281628 hsa-miR-3937 1 1 0
chr22:50281380|50281628 hsa-miR-4467 1 1 0
chr22:50281380|50281628 hsa-miR-4481 0 1 0
chr22:50281380|50281628 hsa-miR-3960 1 1 0
chr22:50281380|50281628 hsa-miR-4706 0 1 0
chr22:50281380|50281628 hsa-miR-5708 0 1 0
chr22:50281380|50281628 hsa-miR-5787 0 1 0
chr22:50281380|50281628 hsa-miR-8052 0 1 0
chr22:50281380|50281628 hsa-miR-8072 0 1 0
chr22:50281380|50281628 hsa-miR-323a-5p 0 1 0
chr22:50281380|50281628 hsa-miR-4665-3p 1 0 0
chr22:50281380|50281628 hsa-miR-6836-3p 1 0 0
chr22:50281380|50281628 hsa-miR-4687-3p 1 0 0
chr22:50281380|50281628 hsa-miR-6820-5p 0 1 0
chr22:50281380|50281628 hsa-miR-6741-5p 1 1 0
chr22:50281380|50281628 hsa-miR-3189-5p 1 0 0
chr22:50281380|50281628 hsa-miR-6768-5p 0 1 0
chr22:50281380|50281628 hsa-miR-6793-5p 1 0 0
chr22:50281380|50281628 hsa-miR-6821-5p 1 0 0
chr22:50281380|50281628 hsa-miR-1228-5p 0 1 0
chr22:50281380|50281628 hsa-miR-6743-3p 0 1 0
chr22:50281380|50281628 hsa-miR-4652-5p 0 1 0
chr22:50281380|50281628 hsa-miR-10400-5p 1 0 0
chr22:50281380|50281628 hsa-miR-6756-5p 1 1 0
chr22:50281380|50281628 hsa-miR-4701-3p 1 0 0
chr22:50281380|50281628 hsa-miR-4745-5p 1 1 0
chr22:50281380|50281628 hsa-miR-4749-5p 0 1 0
chr22:50281380|50281628 hsa-miR-6848-5p 1 0 0
chr22:50281380|50281628 hsa-miR-4758-5p 1 1 0
chr22:50281380|50281628 hsa-miR-4664-5p 0 1 0
chr22:50281380|50281628 hsa-miR-6736-5p 1 0 0
chr22:50281380|50281628 hsa-miR-10392-3p 1 1 0
chr22:50281380|50281628 hsa-miR-6891-3p 0 1 0
chr22:50281380|50281628 hsa-miR-4781-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50281380|50281628
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MCGGPGSARSRGGTPRQSPLTHNELGQVVCGVSFLPPLGRGLH
Nucleotide Sequence CTGTGTGGGGGGCCGGGTTCAGCGCGGTCCCGTGGGGGCACCCCCCGCCAGTCCCCGCTCACGCACAATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGCAC
CircID chr22:50281380|50281628
ORF Type ORF2
Protein Length 81
Nucleotide Length 243
Protein Sequence MTTTMGTMTSGKMRLSGTSLTRVSYSTRPSTHSREPNFTCVGGRVQRGPVGAPPASPRSRTMNSGRLCVVSRFCRRLGGGC
Nucleotide Sequence ATGACGACCACCATGGGCACGATGACCAGCGGCAAGATGAGGCTGAGCGGCACGTCGCTCACCCGTGTGTCGTACTCCACGCGGCCCAGCACCCACTCGCGAGAGCCGAACTTCACCTGTGTGGGGGGCCGGGTTCAGCGCGGTCCCGTGGGGGCACCCCCCGCCAGTCCCCGCTCACGCACAATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGC
CircID chr22:50281380|50281628
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MGRVEYDTRVSDVPLSLILPLVIVPMVVVIA
Nucleotide Sequence CTGGGCCGCGTGGAGTACGACACACGGGTGAGCGACGTGCCGCTCAGCCTCATCTTGCCGCTGGTCATCGTGCCCATGGTGGTCGTCATCGCG
CircID chr22:50281380|50281628
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MNPAPHTGEVRLSRVGAGPRGVRHTGERRAAQPHLAAGHRAHGGRHR
Nucleotide Sequence CTGAACCCGGCCCCCCACACAGGTGAAGTTCGGCTCTCGCGAGTGGGTGCTGGGCCGCGTGGAGTACGACACACGGGTGAGCGACGTGCCGCTCAGCCTCATCTTGCCGCTGGTCATCGTGCCCATGGTGGTCGTCATCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab