CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50281446|50281724
Strand -
CircType exon
Host Gene ENSG00000196576.13;
Algorism CIRI2;
Sequence CCGTGTGTCGTACTCCACGCGGCCCAGCACCCACTCGCGAGAGCCGAACTTCACCTGTGTGGGGGGCCGGGTTCAGCGCGGTCCCGTGGGGGCACCCCCCGCCAGTCCCCGCTCACGCACAATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGCACCTCCGGGGGCTCACAGTACAGGTCGGTCTCCGTCAGCGTCTTCATGGTGCAGCGCTCGGCACCCACGAAGGCCTCGGCCTCCTGCAGCGTCATCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50281446|50281724 hsa-miR-210-5p 0 0 1
chr22:50281446|50281724 hsa-miR-210-3p 0 0 1
chr22:50281446|50281724 hsa-miR-552-5p 0 0 1
chr22:50281446|50281724 hsa-miR-552-3p 0 0 1
chr22:50281446|50281724 hsa-miR-892a 0 0 1
chr22:50281446|50281724 hsa-miR-147b-5p 0 0 1
chr22:50281446|50281724 hsa-miR-147b-3p 0 0 1
chr22:50281446|50281724 hsa-miR-1205 0 0 1
chr22:50281446|50281724 hsa-miR-1286 0 0 1
chr22:50281446|50281724 hsa-miR-125a-3p 1 1 1
chr22:50281446|50281724 hsa-miR-486-5p 0 1 1
chr22:50281446|50281724 hsa-miR-1225-3p 0 1 1
chr22:50281446|50281724 hsa-miR-767-5p 0 1 1
chr22:50281446|50281724 hsa-miR-941 0 1 1
chr22:50281446|50281724 hsa-miR-342-5p 0 1 1
chr22:50281446|50281724 hsa-miR-1233 0 0 1
chr22:50281446|50281724 hsa-miR-663 0 0 1
chr22:50281446|50281724 hsa-miR-637 1 0 0
chr22:50281446|50281724 hsa-miR-663a 1 1 0
chr22:50281446|50281724 hsa-miR-762 1 0 0
chr22:50281446|50281724 hsa-miR-665 1 1 0
chr22:50281446|50281724 hsa-miR-3147 0 1 0
chr22:50281446|50281724 hsa-miR-4266 1 0 0
chr22:50281446|50281724 hsa-miR-3665 1 0 0
chr22:50281446|50281724 hsa-miR-3935 1 0 0
chr22:50281446|50281724 hsa-miR-3937 1 1 0
chr22:50281446|50281724 hsa-miR-3943 0 1 0
chr22:50281446|50281724 hsa-miR-1268b 1 0 0
chr22:50281446|50281724 hsa-miR-4467 1 1 0
chr22:50281446|50281724 hsa-miR-4481 0 1 0
chr22:50281446|50281724 hsa-miR-3960 1 1 0
chr22:50281446|50281724 hsa-miR-4683 1 0 0
chr22:50281446|50281724 hsa-miR-4706 0 1 0
chr22:50281446|50281724 hsa-miR-4730 1 0 0
chr22:50281446|50281724 hsa-miR-5091 0 1 0
chr22:50281446|50281724 hsa-miR-5787 0 1 0
chr22:50281446|50281724 hsa-miR-8052 0 1 0
chr22:50281446|50281724 hsa-miR-8060 0 1 0
chr22:50281446|50281724 hsa-miR-8072 0 1 0
chr22:50281446|50281724 hsa-miR-6836-3p 1 0 0
chr22:50281446|50281724 hsa-miR-6894-5p 1 0 0
chr22:50281446|50281724 hsa-miR-4687-3p 1 0 0
chr22:50281446|50281724 hsa-miR-25-5p 1 0 0
chr22:50281446|50281724 hsa-miR-139-3p 1 0 0
chr22:50281446|50281724 hsa-miR-6089 1 1 0
chr22:50281446|50281724 hsa-miR-4695-5p 1 1 0
chr22:50281446|50281724 hsa-miR-4722-5p 1 1 0
chr22:50281446|50281724 hsa-miR-6820-5p 0 1 0
chr22:50281446|50281724 hsa-miR-6741-5p 1 1 0
chr22:50281446|50281724 hsa-miR-6768-5p 0 1 0
chr22:50281446|50281724 hsa-miR-6748-5p 0 1 0
chr22:50281446|50281724 hsa-miR-6793-5p 1 0 0
chr22:50281446|50281724 hsa-miR-6805-5p 1 0 0
chr22:50281446|50281724 hsa-miR-6798-5p 1 0 0
chr22:50281446|50281724 hsa-miR-3130-3p 0 1 0
chr22:50281446|50281724 hsa-miR-4793-3p 0 1 0
chr22:50281446|50281724 hsa-miR-1228-5p 0 1 0
chr22:50281446|50281724 hsa-miR-3677-3p 0 1 0
chr22:50281446|50281724 hsa-miR-4652-5p 0 1 0
chr22:50281446|50281724 hsa-miR-873-3p 1 0 0
chr22:50281446|50281724 hsa-miR-10400-5p 1 0 0
chr22:50281446|50281724 hsa-miR-4763-3p 1 0 0
chr22:50281446|50281724 hsa-miR-1343-5p 1 0 0
chr22:50281446|50281724 hsa-miR-6756-5p 1 1 0
chr22:50281446|50281724 hsa-miR-6842-5p 0 1 0
chr22:50281446|50281724 hsa-miR-6851-5p 1 0 0
chr22:50281446|50281724 hsa-miR-6722-3p 1 0 0
chr22:50281446|50281724 hsa-miR-1237-5p 1 0 0
chr22:50281446|50281724 hsa-miR-1909-3p 1 0 0
chr22:50281446|50281724 hsa-miR-4745-5p 1 1 0
chr22:50281446|50281724 hsa-miR-4749-5p 0 1 0
chr22:50281446|50281724 hsa-miR-6729-5p 1 0 0
chr22:50281446|50281724 hsa-miR-6848-5p 1 0 0
chr22:50281446|50281724 hsa-miR-4758-5p 1 1 0
chr22:50281446|50281724 hsa-miR-4664-5p 0 1 0
chr22:50281446|50281724 hsa-miR-3689d 0 1 0
chr22:50281446|50281724 hsa-miR-10392-3p 1 1 0
chr22:50281446|50281724 hsa-miR-4781-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50281446|50281724
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MCGGPGSARSRGGTPRQSPLTHNELGQVVCGVSFLPPLGRGLHLRGLTVQVGLRQRLHGAALGTHEGLGLLQRHR
Nucleotide Sequence CTGTGTGGGGGGCCGGGTTCAGCGCGGTCCCGTGGGGGCACCCCCCGCCAGTCCCCGCTCACGCACAATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGCACCTCCGGGGGCTCACAGTACAGGTCGGTCTCCGTCAGCGTCTTCATGGTGCAGCGCTCGGCACCCACGAAGGCCTCGGCCTCCTGCAGCGTCATCGC
CircID chr22:50281446|50281724
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MNSGRLCVVSRFCRRLGGGCTSGGSQYRSVSVSVFMVQRSAPTKASASCSVI
Nucleotide Sequence ATGAACTCGGGCAGGTTGTGTGTGGTGTCTCGTTTCTGCCGCCGCTTGGGCGGGGGCTGCACCTCCGGGGGCTCACAGTACAGGTCGGTCTCCGTCAGCGTCTTCATGGTGCAGCGCTCGGCACCCACGAAGGCCTCGGCCTCCTGCAGCGTCATC
CircID chr22:50281446|50281724
ORF Type ORF3
Protein Length 67
Nucleotide Length 204
Protein Sequence MTLQEAEAFVGAERCTMKTLTETDLYCEPPEVQPPPKRRQKRDTTHNLPEFIVRERGLAGGAPTGPR
Nucleotide Sequence ATGACGCTGCAGGAGGCCGAGGCCTTCGTGGGTGCCGAGCGCTGCACCATGAAGACGCTGACGGAGACCGACCTGTACTGTGAGCCCCCGGAGGTGCAGCCCCCGCCCAAGCGGCGGCAGAAACGAGACACCACACACAACCTGCCCGAGTTCATTGTGCGTGAGCGGGGACTGGCGGGGGGTGCCCCCACGGGACCGCGCTGA
CircID chr22:50281446|50281724
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MNPAPHTGEVRLSRVGAGPRGVRHT
Nucleotide Sequence CTGAACCCGGCCCCCCACACAGGTGAAGTTCGGCTCTCGCGAGTGGGTGCTGGGCCGCGTGGAGTACGACACACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab