CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50290095|50290416
Strand -
CircType exon
Host Gene ENSG00000196576.13;
Algorism CIRI2;
Sequence CACCAGGACCCGTGGAGCTCACCAGCCCCACTGTGGCCACGCCCTCATCATTGCTGGCCACGAAAGACTTCTCCCCGCTGCCGTCCTCGTAGAACAGGCGGAGGGAGATGTTGCTCAGGGCGCGCAGAGCGCAGATGCCCTTGAAGAGGCTGCCGCACTCCACCAGGCGCTTCCTGGGAGGGTCGAGCAGCAGCAGCTGGTTGACATTGTCAGTCATCTCAGCCTCATGGCACTGGCTGGCCTCGATGGGCGGCGTGCACTTCTTGTTGTCCAGGGCCGGGCCCGTGGCCACCTGCTGCTCCAGCTGCAGCTTCGCATCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50290095|50290416 hsa-miR-15a-5p 0 0 1
chr22:50290095|50290416 hsa-miR-15a-3p 0 0 1
chr22:50290095|50290416 hsa-miR-214-5p 0 0 1
chr22:50290095|50290416 hsa-miR-214-3p 0 0 1
chr22:50290095|50290416 hsa-miR-15b-5p 0 0 1
chr22:50290095|50290416 hsa-miR-15b-3p 0 0 1
chr22:50290095|50290416 hsa-miR-122-5p 0 0 1
chr22:50290095|50290416 hsa-miR-122-3p 0 0 1
chr22:50290095|50290416 hsa-miR-143-5p 0 0 1
chr22:50290095|50290416 hsa-miR-143-3p 0 0 1
chr22:50290095|50290416 hsa-miR-195-5p 0 0 1
chr22:50290095|50290416 hsa-miR-195-3p 0 0 1
chr22:50290095|50290416 hsa-miR-424-5p 0 0 1
chr22:50290095|50290416 hsa-miR-424-3p 0 0 1
chr22:50290095|50290416 hsa-miR-497-5p 0 0 1
chr22:50290095|50290416 hsa-miR-497-3p 0 0 1
chr22:50290095|50290416 hsa-miR-505-5p 0 0 1
chr22:50290095|50290416 hsa-miR-505-3p 0 0 1
chr22:50290095|50290416 hsa-miR-551a 0 0 1
chr22:50290095|50290416 hsa-miR-551b-5p 0 0 1
chr22:50290095|50290416 hsa-miR-551b-3p 0 0 1
chr22:50290095|50290416 hsa-miR-575 0 0 1
chr22:50290095|50290416 hsa-miR-588 0 1 1
chr22:50290095|50290416 hsa-miR-611 0 1 1
chr22:50290095|50290416 hsa-miR-1264 0 0 1
chr22:50290095|50290416 hsa-miR-1301-5p 0 0 1
chr22:50290095|50290416 hsa-miR-1301-3p 0 0 1
chr22:50290095|50290416 hsa-miR-1204 0 0 1
chr22:50290095|50290416 hsa-miR-1291 0 1 1
chr22:50290095|50290416 hsa-miR-1272 0 0 1
chr22:50290095|50290416 hsa-miR-1825 0 0 1
chr22:50290095|50290416 hsa-miR-885-3p 0 1 1
chr22:50290095|50290416 hsa-miR-485-5p 0 1 1
chr22:50290095|50290416 hsa-miR-1184 0 0 1
chr22:50290095|50290416 hsa-miR-1207-3p 0 0 1
chr22:50290095|50290416 hsa-miR-125a-5p 0 1 1
chr22:50290095|50290416 hsa-miR-519b-3p 0 1 1
chr22:50290095|50290416 hsa-miR-519c-3p 0 1 1
chr22:50290095|50290416 hsa-miR-128 0 0 1
chr22:50290095|50290416 hsa-miR-125b 0 0 1
chr22:50290095|50290416 hsa-miR-16 0 0 1
chr22:50290095|50290416 hsa-miR-138 0 0 1
chr22:50290095|50290416 hsa-miR-1268 0 0 1
chr22:50290095|50290416 hsa-miR-519a 0 0 1
chr22:50290095|50290416 hsa-miR-638 1 0 0
chr22:50290095|50290416 hsa-miR-661 1 0 0
chr22:50290095|50290416 hsa-miR-663a 1 0 0
chr22:50290095|50290416 hsa-miR-1268a 1 1 0
chr22:50290095|50290416 hsa-miR-1470 0 1 0
chr22:50290095|50290416 hsa-miR-3131 0 1 0
chr22:50290095|50290416 hsa-miR-3137 0 1 0
chr22:50290095|50290416 hsa-miR-4319 0 1 0
chr22:50290095|50290416 hsa-miR-3921 0 1 0
chr22:50290095|50290416 hsa-miR-3929 0 1 0
chr22:50290095|50290416 hsa-miR-1268b 1 1 0
chr22:50290095|50290416 hsa-miR-3135b 1 1 0
chr22:50290095|50290416 hsa-miR-4478 0 1 0
chr22:50290095|50290416 hsa-miR-4651 1 0 0
chr22:50290095|50290416 hsa-miR-4688 1 0 0
chr22:50290095|50290416 hsa-miR-4706 0 1 0
chr22:50290095|50290416 hsa-miR-4767 1 0 0
chr22:50290095|50290416 hsa-miR-5047 0 1 0
chr22:50290095|50290416 hsa-miR-6081 1 1 0
chr22:50290095|50290416 hsa-miR-6085 1 0 0
chr22:50290095|50290416 hsa-miR-7706 0 1 0
chr22:50290095|50290416 hsa-miR-7976 0 1 0
chr22:50290095|50290416 hsa-miR-12115 1 0 0
chr22:50290095|50290416 hsa-miR-196a-3p 0 1 0
chr22:50290095|50290416 hsa-miR-504-3p 0 1 0
chr22:50290095|50290416 hsa-miR-3194-3p 0 1 0
chr22:50290095|50290416 hsa-miR-6089 1 1 0
chr22:50290095|50290416 hsa-miR-6880-5p 1 0 0
chr22:50290095|50290416 hsa-miR-3187-3p 1 1 0
chr22:50290095|50290416 hsa-miR-4761-3p 0 1 0
chr22:50290095|50290416 hsa-miR-7108-5p 1 1 0
chr22:50290095|50290416 hsa-miR-6796-5p 0 1 0
chr22:50290095|50290416 hsa-miR-185-3p 1 1 0
chr22:50290095|50290416 hsa-miR-6805-5p 0 1 0
chr22:50290095|50290416 hsa-miR-3194-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6850-5p 1 0 0
chr22:50290095|50290416 hsa-miR-6786-5p 1 0 0
chr22:50290095|50290416 hsa-miR-1226-5p 0 1 0
chr22:50290095|50290416 hsa-miR-4638-3p 1 0 0
chr22:50290095|50290416 hsa-miR-1266-3p 0 1 0
chr22:50290095|50290416 hsa-miR-4446-3p 1 0 0
chr22:50290095|50290416 hsa-miR-194-3p 0 1 0
chr22:50290095|50290416 hsa-miR-7846-3p 1 0 0
chr22:50290095|50290416 hsa-miR-5571-3p 0 1 0
chr22:50290095|50290416 hsa-miR-6720-3p 0 1 0
chr22:50290095|50290416 hsa-miR-1304-5p 0 1 0
chr22:50290095|50290416 hsa-miR-216a-3p 0 1 0
chr22:50290095|50290416 hsa-miR-937-3p 1 0 0
chr22:50290095|50290416 hsa-miR-1296-3p 0 1 0
chr22:50290095|50290416 hsa-miR-16-5p 0 1 0
chr22:50290095|50290416 hsa-miR-10400-5p 1 0 0
chr22:50290095|50290416 hsa-miR-5001-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6743-5p 1 0 0
chr22:50290095|50290416 hsa-miR-6756-5p 1 0 0
chr22:50290095|50290416 hsa-miR-6803-5p 1 0 0
chr22:50290095|50290416 hsa-miR-6813-5p 1 0 0
chr22:50290095|50290416 hsa-miR-3620-5p 1 0 0
chr22:50290095|50290416 hsa-miR-10396a-5p 1 0 0
chr22:50290095|50290416 hsa-miR-1237-5p 0 1 0
chr22:50290095|50290416 hsa-miR-4749-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6777-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6848-5p 1 0 0
chr22:50290095|50290416 hsa-miR-939-5p 1 0 0
chr22:50290095|50290416 hsa-miR-1285-3p 0 1 0
chr22:50290095|50290416 hsa-miR-324-3p 1 0 0
chr22:50290095|50290416 hsa-miR-2682-3p 0 1 0
chr22:50290095|50290416 hsa-miR-6884-5p 1 1 0
chr22:50290095|50290416 hsa-miR-33b-3p 0 1 0
chr22:50290095|50290416 hsa-miR-4676-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6838-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6506-5p 0 1 0
chr22:50290095|50290416 hsa-miR-6855-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr22:50290095|50290416
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MWPRPHHCWPRKTSPRCRPRRTGGGRCCSGRAERRCP
Nucleotide Sequence CTGTGGCCACGCCCTCATCATTGCTGGCCACGAAAGACTTCTCCCCGCTGCCGTCCTCGTAGAACAGGCGGAGGGAGATGTTGCTCAGGGCGCGCAGAGCGCAGATGCCCTTGA

CircID chr22:50290095|50290416
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MVDIVSHLSLMALAGLDGRRALLVVQGRARGHLLLQLQLRIQ
Nucleotide Sequence CTGGTTGACATTGTCAGTCATCTCAGCCTCATGGCACTGGCTGGCCTCGATGGGCGGCGTGCACTTCTTGTTGTCCAGGGCCGGGCCCGTGGCCACCTGCTGCTCCAGCTGCAGCTTCGCATCCAG

CircID chr22:50290095|50290416
ORF Type ORF3
Protein Length 71
Nucleotide Length 213
Protein Sequence MLLRARRAQMPLKRLPHSTRRFLGGSSSSSWLTLSVISASWHWLASMGGVHFLLSRAGPVATCCSSCSFAS
Nucleotide Sequence ATGTTGCTCAGGGCGCGCAGAGCGCAGATGCCCTTGAAGAGGCTGCCGCACTCCACCAGGCGCTTCCTGGGAGGGTCGAGCAGCAGCAGCTGGTTGACATTGTCAGTCATCTCAGCCTCATGGCACTGGCTGGCCTCGATGGGCGGCGTGCACTTCTTGTTGTCCAGGGCCGGGCCCGTGGCCACCTGCTGCTCCAGCTGCAGCTTCGCATCC

CircID chr22:50290095|50290416
ORF Type ORF4
Protein Length 107
Nucleotide Length 321
Protein Sequence LDAKLQLEQQVATGPALDNKKCTPPIEASQCHEAEMTDNVNQLLLLDPPRKRLVECGSLFKGICALRALSNISLRLFYEDGSGEKSFVASNDEGVATVGLVSSTGPG
Nucleotide Sequence CTGGATGCGAAGCTGCAGCTGGAGCAGCAGGTGGCCACGGGCCCGGCCCTGGACAACAAGAAGTGCACGCCGCCCATCGAGGCCAGCCAGTGCCATGAGGCTGAGATGACTGACAATGTCAACCAGCTGCTGCTGCTCGACCCTCCCAGGAAGCGCCTGGTGGAGTGCGGCAGCCTCTTCAAGGGCATCTGCGCTCTGCGCGCCCTGAGCAACATCTCCCTCCGCCTGTTCTACGAGGACGGCAGCGGGGAGAAGTCTTTCGTGGCCAGCAATGATGAGGGCGTGGCCACAGTGGGGCTGGTGAGCTCCACGGGTCCTGGT

CircID chr22:50290095|50290416
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MRSCSWSSRWPRARPWTTRSARRPSRPASAMRLR
Nucleotide Sequence ATGCGAAGCTGCAGCTGGAGCAGCAGGTGGCCACGGGCCCGGCCCTGGACAACAAGAAGTGCACGCCGCCCATCGAGGCCAGCCAGTGCCATGAGGCTGAGATGA

CircID chr22:50290095|50290416
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MTMSTSCCCSTLPGSAWWSAAASSRASALCAP
Nucleotide Sequence CTGACAATGTCAACCAGCTGCTGCTGCTCGACCCTCCCAGGAAGCGCCTGGTGGAGTGCGGCAGCCTCTTCAAGGGCATCTGCGCTCTGCGCGCCCTGA

CircID chr22:50290095|50290416
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MRSARPEQHLPPPVLRGRQRGEVFRGQQ
Nucleotide Sequence CTGCGCTCTGCGCGCCCTGAGCAACATCTCCCTCCGCCTGTTCTACGAGGACGGCAGCGGGGAGAAGTCTTTCGTGGCCAGCAATGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites