CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50506152|50506390
Strand +
CircType exon
Host Gene ENSG00000100258.16;
Algorism CIRI2;
Sequence GAAGACCTCCCCTTCTGGCTGGTGCGATGGCTGCTGTTCCGCCTCATGTTCGCCTCAGGCGTGGTCAAGCTGACCAGCCGCTGCCCTGCGTGGTGGGGGCTCACTGGTGAGGGGCCCGGTCTGGACCTGGGGTAGTCTGGGGGCTCGGCCAGCCCTGACTCCTGCCCTCGCCTGCAGCCCTCACCTACCACTACGAGACCCAGTGCCTGCCCACGCCCGCCGCCTGGTTCGCACACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50506152|50506390 hsa-miR-198 0 0 1
chr22:50506152|50506390 hsa-miR-1226-5p 0 0 1
chr22:50506152|50506390 hsa-miR-1226-3p 0 0 1
chr22:50506152|50506390 hsa-miR-1205 0 0 1
chr22:50506152|50506390 hsa-miR-140-5p 0 0 1
chr22:50506152|50506390 hsa-miR-1225-3p 0 1 1
chr22:50506152|50506390 hsa-miR-296-5p 0 1 1
chr22:50506152|50506390 hsa-miR-615-3p 0 1 1
chr22:50506152|50506390 hsa-miR-885-3p 1 1 1
chr22:50506152|50506390 hsa-miR-193a-5p 1 0 1
chr22:50506152|50506390 hsa-miR-361-3p 0 0 1
chr22:50506152|50506390 hsa-miR-1233 0 0 1
chr22:50506152|50506390 hsa-miR-1268 0 0 1
chr22:50506152|50506390 hsa-miR-449a 0 1 0
chr22:50506152|50506390 hsa-miR-663a 1 0 0
chr22:50506152|50506390 hsa-miR-658 1 0 0
chr22:50506152|50506390 hsa-miR-762 1 1 0
chr22:50506152|50506390 hsa-miR-298 0 1 0
chr22:50506152|50506390 hsa-miR-760 1 0 0
chr22:50506152|50506390 hsa-miR-940 1 0 0
chr22:50506152|50506390 hsa-miR-1183 1 0 0
chr22:50506152|50506390 hsa-miR-1268a 1 0 0
chr22:50506152|50506390 hsa-miR-544b 0 1 0
chr22:50506152|50506390 hsa-miR-3141 1 0 0
chr22:50506152|50506390 hsa-miR-3154 0 1 0
chr22:50506152|50506390 hsa-miR-3196 1 0 0
chr22:50506152|50506390 hsa-miR-4322 1 0 0
chr22:50506152|50506390 hsa-miR-4265 1 0 0
chr22:50506152|50506390 hsa-miR-3665 1 0 0
chr22:50506152|50506390 hsa-miR-3937 1 1 0
chr22:50506152|50506390 hsa-miR-3943 0 1 0
chr22:50506152|50506390 hsa-miR-1268b 1 0 0
chr22:50506152|50506390 hsa-miR-4466 1 0 0
chr22:50506152|50506390 hsa-miR-4467 1 1 0
chr22:50506152|50506390 hsa-miR-4488 1 0 0
chr22:50506152|50506390 hsa-miR-4492 0 1 0
chr22:50506152|50506390 hsa-miR-4498 0 1 0
chr22:50506152|50506390 hsa-miR-4507 1 0 0
chr22:50506152|50506390 hsa-miR-1587 1 0 0
chr22:50506152|50506390 hsa-miR-3960 1 1 0
chr22:50506152|50506390 hsa-miR-4651 1 0 0
chr22:50506152|50506390 hsa-miR-4656 1 0 0
chr22:50506152|50506390 hsa-miR-4710 1 1 0
chr22:50506152|50506390 hsa-miR-4721 1 1 0
chr22:50506152|50506390 hsa-miR-4734 1 1 0
chr22:50506152|50506390 hsa-miR-4767 1 0 0
chr22:50506152|50506390 hsa-miR-5787 1 0 0
chr22:50506152|50506390 hsa-miR-6069 1 0 0
chr22:50506152|50506390 hsa-miR-6075 1 0 0
chr22:50506152|50506390 hsa-miR-6078 0 1 0
chr22:50506152|50506390 hsa-miR-6081 1 0 0
chr22:50506152|50506390 hsa-miR-6131 0 1 0
chr22:50506152|50506390 hsa-miR-6132 0 1 0
chr22:50506152|50506390 hsa-miR-6860 1 0 0
chr22:50506152|50506390 hsa-miR-8072 1 1 0
chr22:50506152|50506390 hsa-miR-6734-5p 1 1 0
chr22:50506152|50506390 hsa-miR-4726-3p 0 1 0
chr22:50506152|50506390 hsa-miR-4433a-3p 0 1 0
chr22:50506152|50506390 hsa-miR-6765-5p 1 1 0
chr22:50506152|50506390 hsa-miR-6861-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4687-3p 1 0 0
chr22:50506152|50506390 hsa-miR-6799-5p 1 0 0
chr22:50506152|50506390 hsa-miR-3622a-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6089 1 0 0
chr22:50506152|50506390 hsa-miR-6880-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4722-5p 1 1 0
chr22:50506152|50506390 hsa-miR-593-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6727-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6721-5p 1 1 0
chr22:50506152|50506390 hsa-miR-4711-5p 0 1 0
chr22:50506152|50506390 hsa-miR-3180-3p 1 0 0
chr22:50506152|50506390 hsa-miR-6772-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6829-5p 0 1 0
chr22:50506152|50506390 hsa-miR-3944-3p 1 0 0
chr22:50506152|50506390 hsa-miR-1229-5p 1 0 0
chr22:50506152|50506390 hsa-miR-3127-5p 0 1 0
chr22:50506152|50506390 hsa-miR-1228-5p 1 0 0
chr22:50506152|50506390 hsa-miR-296-3p 0 1 0
chr22:50506152|50506390 hsa-miR-4690-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6749-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4446-3p 0 1 0
chr22:50506152|50506390 hsa-miR-7162-3p 1 1 0
chr22:50506152|50506390 hsa-miR-7112-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4749-3p 0 1 0
chr22:50506152|50506390 hsa-miR-2277-5p 1 0 0
chr22:50506152|50506390 hsa-miR-1229-3p 0 1 0
chr22:50506152|50506390 hsa-miR-10400-5p 1 1 0
chr22:50506152|50506390 hsa-miR-4763-3p 1 1 0
chr22:50506152|50506390 hsa-miR-6769b-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6787-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6812-5p 0 1 0
chr22:50506152|50506390 hsa-miR-6816-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6893-5p 0 1 0
chr22:50506152|50506390 hsa-miR-5001-5p 1 1 0
chr22:50506152|50506390 hsa-miR-6743-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6752-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6756-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6803-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6851-5p 1 0 0
chr22:50506152|50506390 hsa-miR-10401-5p 1 1 0
chr22:50506152|50506390 hsa-miR-6722-3p 1 1 0
chr22:50506152|50506390 hsa-miR-6751-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6779-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6879-5p 1 1 0
chr22:50506152|50506390 hsa-miR-3620-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6836-5p 0 1 0
chr22:50506152|50506390 hsa-miR-10396b-5p 1 0 0
chr22:50506152|50506390 hsa-miR-1237-5p 1 0 0
chr22:50506152|50506390 hsa-miR-328-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4632-5p 1 1 0
chr22:50506152|50506390 hsa-miR-4649-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4749-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6729-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6735-5p 0 1 0
chr22:50506152|50506390 hsa-miR-6846-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6848-5p 1 0 0
chr22:50506152|50506390 hsa-miR-3187-5p 1 0 0
chr22:50506152|50506390 hsa-miR-4436b-3p 0 1 0
chr22:50506152|50506390 hsa-miR-6511b-5p 0 1 0
chr22:50506152|50506390 hsa-miR-3940-5p 1 0 0
chr22:50506152|50506390 hsa-miR-1199-5p 1 0 0
chr22:50506152|50506390 hsa-miR-7843-5p 0 1 0
chr22:50506152|50506390 hsa-miR-6724-5p 1 0 0
chr22:50506152|50506390 hsa-miR-6791-5p 1 0 0
chr22:50506152|50506390 hsa-miR-449b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:50506152|50506390
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MVRWLLFRLMFASGVVKLTSRCPAWWGLTGEGPGLDLG
Nucleotide Sequence CTGGTGCGATGGCTGCTGTTCCGCCTCATGTTCGCCTCAGGCGTGGTCAAGCTGACCAGCCGCTGCCCTGCGTGGTGGGGGCTCACTGGTGAGGGGCCCGGTCTGGACCTGGGGTAG
CircID chr22:50506152|50506390
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MRGGGSLVRGPVWTWGSLGARPALTPALACSPHLPLRDPVPAHARRLVRTP
Nucleotide Sequence CTGCGTGGTGGGGGCTCACTGGTGAGGGGCCCGGTCTGGACCTGGGGTAGTCTGGGGGCTCGGCCAGCCCTGACTCCTGCCCTCGCCTGCAGCCCTCACCTACCACTACGAGACCCAGTGCCTGCCCACGCCCGCCGCCTGGTTCGCACACCA
CircID chr22:50506152|50506390
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MAGAMAAVPPHVRLRRGQADQPLPCVVGAHW
Nucleotide Sequence CTGGCTGGTGCGATGGCTGCTGTTCCGCCTCATGTTCGCCTCAGGCGTGGTCAAGCTGACCAGCCGCTGCCCTGCGTGGTGGGGGCTCACTGGTGA
CircID chr22:50506152|50506390
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MPSPAALTYHYETQCLPTPAAWFAHH
Nucleotide Sequence CTGCCCTCGCCTGCAGCCCTCACCTACCACTACGAGACCCAGTGCCTGCCCACGCCCGCCGCCTGGTTCGCACACCAC
CircID chr22:50506152|50506390
ORF Type ORF5
Protein Length 67
Nucleotide Length 201
Protein Sequence MGLVVVGEGCRRGQESGLAEPPDYPRSRPGPSPVSPHHAGQRLVSLTTPEANMRRNSSHRTSQKGRS
Nucleotide Sequence CTGGGTCTCGTAGTGGTAGGTGAGGGCTGCAGGCGAGGGCAGGAGTCAGGGCTGGCCGAGCCCCCAGACTACCCCAGGTCCAGACCGGGCCCCTCACCAGTGAGCCCCCACCACGCAGGGCAGCGGCTGGTCAGCTTGACCACGCCTGAGGCGAACATGAGGCGGAACAGCAGCCATCGCACCAGCCAGAAGGGGAGGTCT
CircID chr22:50506152|50506390
ORF Type ORF6
Protein Length 40
Nucleotide Length 123
Protein Sequence MQARAGVRAGRAPRLPQVQTGPLTSEPPPRRAAAGQLDHA
Nucleotide Sequence CTGCAGGCGAGGGCAGGAGTCAGGGCTGGCCGAGCCCCCAGACTACCCCAGGTCCAGACCGGGCCCCTCACCAGTGAGCCCCCACCACGCAGGGCAGCGGCTGGTCAGCTTGACCACGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab