CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50529172|50529273
Strand -
CircType exon
Host Gene ENSG00000025708.11;
Algorism CIRI2;
Sequence CAGGCTGACCTTGTCACCCACACCCCCTGTGGAATGCTTGTCCACAAGCTGCTGGCGCCAGGCCTCTGGCCACTCCAGCTGCTGTCCCGACTGAGCCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50529172|50529273 hsa-miR-122-5p 0 0 1
chr22:50529172|50529273 hsa-miR-122-3p 0 0 1
chr22:50529172|50529273 hsa-miR-149-5p 0 0 1
chr22:50529172|50529273 hsa-miR-149-3p 0 0 1
chr22:50529172|50529273 hsa-miR-624-5p 0 0 1
chr22:50529172|50529273 hsa-miR-624-3p 0 0 1
chr22:50529172|50529273 hsa-miR-646 0 0 1
chr22:50529172|50529273 hsa-miR-1179 0 0 1
chr22:50529172|50529273 hsa-miR-1262 0 0 1
chr22:50529172|50529273 hsa-miR-566 0 0 1
chr22:50529172|50529273 hsa-miR-1207-3p 0 0 1
chr22:50529172|50529273 hsa-miR-220c 0 0 1
chr22:50529172|50529273 hsa-miR-24 0 0 1
chr22:50529172|50529273 hsa-miR-608 1 0 0
chr22:50529172|50529273 hsa-miR-638 1 0 0
chr22:50529172|50529273 hsa-miR-1268a 1 0 0
chr22:50529172|50529273 hsa-miR-3138 0 1 0
chr22:50529172|50529273 hsa-miR-4298 1 1 0
chr22:50529172|50529273 hsa-miR-1268b 1 0 0
chr22:50529172|50529273 hsa-miR-4455 0 1 0
chr22:50529172|50529273 hsa-miR-3135b 0 1 0
chr22:50529172|50529273 hsa-miR-4651 1 0 0
chr22:50529172|50529273 hsa-miR-4688 1 0 0
chr22:50529172|50529273 hsa-miR-4435 0 1 0
chr22:50529172|50529273 hsa-miR-6747-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6089 1 0 0
chr22:50529172|50529273 hsa-miR-3677-5p 1 1 0
chr22:50529172|50529273 hsa-miR-593-5p 1 0 0
chr22:50529172|50529273 hsa-miR-24-3p 0 1 0
chr22:50529172|50529273 hsa-miR-6727-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6759-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6748-5p 0 1 0
chr22:50529172|50529273 hsa-miR-6732-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6798-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6786-5p 1 0 0
chr22:50529172|50529273 hsa-miR-2277-3p 1 0 0
chr22:50529172|50529273 hsa-miR-6771-5p 1 0 0
chr22:50529172|50529273 hsa-miR-10400-5p 1 0 0
chr22:50529172|50529273 hsa-miR-4763-3p 1 0 0
chr22:50529172|50529273 hsa-miR-6769b-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6775-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6737-5p 0 1 0
chr22:50529172|50529273 hsa-miR-6743-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6752-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6756-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6803-5p 1 0 0
chr22:50529172|50529273 hsa-miR-7110-5p 1 1 0
chr22:50529172|50529273 hsa-miR-6722-3p 1 0 0
chr22:50529172|50529273 hsa-miR-6751-5p 1 0 0
chr22:50529172|50529273 hsa-miR-4632-5p 1 0 0
chr22:50529172|50529273 hsa-miR-4701-3p 0 1 0
chr22:50529172|50529273 hsa-miR-4726-5p 0 1 0
chr22:50529172|50529273 hsa-miR-3187-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6849-5p 1 0 0
chr22:50529172|50529273 hsa-miR-6718-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50529172|50529273
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MTLSPTPPVECLSTSCWRQASGHSSCCPD
Nucleotide Sequence CTGACCTTGTCACCCACACCCCCTGTGGAATGCTTGTCCACAAGCTGCTGGCGCCAGGCCTCTGGCCACTCCAGCTGCTGTCCCGACTGA
CircID chr22:50529172|50529273
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MWNACPQAAGARPLATPAAVPTEPG
Nucleotide Sequence CTGTGGAATGCTTGTCCACAAGCTGCTGGCGCCAGGCCTCTGGCCACTCCAGCTGCTGTCCCGACTGAGCCAGGG
CircID chr22:50529172|50529273
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSL
Nucleotide Sequence CTGGCTCAGTCGGGACAGCAGCTGGAGTGGCCAGAGGCCTGGCGCCAGCAGCTTGTGGACAAGCATTCCACAGGGGGTGTGGGTGACAAGGTCAGCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab