CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50529290|50529658
Strand +
CircType exon
Host Gene ENSG00000025708.11;
Algorism CIRI2;
Sequence TTCTCCGGGGAAGGGAGCCAGGGACTTCCCGACCCTTCGCCAGAGCCCAAGCAGCTCCCGGAGCTGATCCGCATGAAGCGAGACGGAGGCCGCCTGAGCGAAGCGGACATCAGGGGCTTCGTGGCCGCTGTGGTGAATGGGAGCGCGCAGGGCGCACAGATCGGTGCGTGGGGAGGGTTGGGCGTTCCTGACCCCGACTGGGAGGTCAGCCCGAGAGACTTTGGGTCCCTGGGGGTGCGACGGTGCCCCACTACCAGCACCGGCCCCAGGGTGCCCCACCGCTGTGGGCTGCCACCCTCACGCGTACCCCCACATACCAGGGGCCATGCTGATGGCCATCCGACTTCGGGGCATGGATCTGGAGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50529290|50529658 hsa-miR-197-5p 0 0 1
chr22:50529290|50529658 hsa-miR-197-3p 0 0 1
chr22:50529290|50529658 hsa-miR-149-5p 0 0 1
chr22:50529290|50529658 hsa-miR-149-3p 0 0 1
chr22:50529290|50529658 hsa-miR-558 0 0 1
chr22:50529290|50529658 hsa-miR-635 0 1 1
chr22:50529290|50529658 hsa-miR-873-5p 0 0 1
chr22:50529290|50529658 hsa-miR-873-3p 0 0 1
chr22:50529290|50529658 hsa-miR-760 0 0 1
chr22:50529290|50529658 hsa-miR-920 0 0 1
chr22:50529290|50529658 hsa-miR-933 0 0 1
chr22:50529290|50529658 hsa-miR-1250-5p 0 0 1
chr22:50529290|50529658 hsa-miR-1250-3p 0 0 1
chr22:50529290|50529658 hsa-miR-491-5p 0 0 1
chr22:50529290|50529658 hsa-miR-486-3p 0 0 1
chr22:50529290|50529658 hsa-miR-885-3p 0 0 1
chr22:50529290|50529658 hsa-miR-299-3p 0 0 1
chr22:50529290|50529658 hsa-miR-361-3p 0 0 1
chr22:50529290|50529658 hsa-miR-331-3p 0 0 1
chr22:50529290|50529658 hsa-miR-140-3p 0 0 1
chr22:50529290|50529658 hsa-miR-220b 0 0 1
chr22:50529290|50529658 hsa-miR-886-5p 0 0 1
chr22:50529290|50529658 hsa-miR-138 0 0 1
chr22:50529290|50529658 hsa-miR-720 0 0 1
chr22:50529290|50529658 hsa-miR-608 1 0 0
chr22:50529290|50529658 hsa-miR-637 0 1 0
chr22:50529290|50529658 hsa-miR-662 1 0 0
chr22:50529290|50529658 hsa-miR-663a 1 0 0
chr22:50529290|50529658 hsa-miR-1470 1 0 0
chr22:50529290|50529658 hsa-miR-1539 1 1 0
chr22:50529290|50529658 hsa-miR-4322 1 0 0
chr22:50529290|50529658 hsa-miR-4321 0 1 0
chr22:50529290|50529658 hsa-miR-4292 0 1 0
chr22:50529290|50529658 hsa-miR-3615 0 1 0
chr22:50529290|50529658 hsa-miR-3937 1 0 0
chr22:50529290|50529658 hsa-miR-3943 1 0 0
chr22:50529290|50529658 hsa-miR-4449 1 0 0
chr22:50529290|50529658 hsa-miR-4497 0 1 0
chr22:50529290|50529658 hsa-miR-1587 1 0 0
chr22:50529290|50529658 hsa-miR-4651 1 0 0
chr22:50529290|50529658 hsa-miR-4656 1 0 0
chr22:50529290|50529658 hsa-miR-4674 0 1 0
chr22:50529290|50529658 hsa-miR-4734 1 0 0
chr22:50529290|50529658 hsa-miR-4741 1 0 0
chr22:50529290|50529658 hsa-miR-211-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6749-3p 1 0 0
chr22:50529290|50529658 hsa-miR-92a-2-5p 0 1 0
chr22:50529290|50529658 hsa-miR-128-1-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6892-3p 1 0 0
chr22:50529290|50529658 hsa-miR-6804-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6089 1 0 0
chr22:50529290|50529658 hsa-miR-1225-3p 1 0 0
chr22:50529290|50529658 hsa-miR-6741-5p 1 0 0
chr22:50529290|50529658 hsa-miR-3189-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6845-3p 1 0 0
chr22:50529290|50529658 hsa-miR-3151-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6796-5p 0 1 0
chr22:50529290|50529658 hsa-miR-185-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6732-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6782-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6735-3p 1 0 0
chr22:50529290|50529658 hsa-miR-3934-3p 1 0 0
chr22:50529290|50529658 hsa-miR-1343-3p 1 0 0
chr22:50529290|50529658 hsa-miR-6786-5p 1 1 0
chr22:50529290|50529658 hsa-miR-1226-5p 1 0 0
chr22:50529290|50529658 hsa-miR-3944-3p 1 1 0
chr22:50529290|50529658 hsa-miR-6771-5p 1 1 0
chr22:50529290|50529658 hsa-miR-4783-5p 1 0 0
chr22:50529290|50529658 hsa-miR-4787-5p 1 0 0
chr22:50529290|50529658 hsa-miR-425-3p 0 1 0
chr22:50529290|50529658 hsa-miR-3189-3p 0 1 0
chr22:50529290|50529658 hsa-miR-1225-5p 1 0 0
chr22:50529290|50529658 hsa-miR-4687-5p 1 1 0
chr22:50529290|50529658 hsa-miR-1251-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6793-3p 1 0 0
chr22:50529290|50529658 hsa-miR-4774-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6895-3p 0 1 0
chr22:50529290|50529658 hsa-miR-7113-5p 0 1 0
chr22:50529290|50529658 hsa-miR-4529-5p 0 1 0
chr22:50529290|50529658 hsa-miR-1296-3p 0 1 0
chr22:50529290|50529658 hsa-miR-3184-3p 0 1 0
chr22:50529290|50529658 hsa-miR-4433a-5p 1 0 0
chr22:50529290|50529658 hsa-miR-3173-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6779-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6734-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6800-3p 1 0 0
chr22:50529290|50529658 hsa-miR-3162-3p 1 0 0
chr22:50529290|50529658 hsa-miR-5581-3p 0 1 0
chr22:50529290|50529658 hsa-miR-10400-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6726-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6752-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6756-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6803-5p 1 1 0
chr22:50529290|50529658 hsa-miR-6751-5p 1 1 0
chr22:50529290|50529658 hsa-miR-4685-3p 0 1 0
chr22:50529290|50529658 hsa-miR-3620-5p 1 0 0
chr22:50529290|50529658 hsa-miR-10392-5p 1 1 0
chr22:50529290|50529658 hsa-miR-4649-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6848-5p 1 0 0
chr22:50529290|50529658 hsa-miR-939-5p 1 1 0
chr22:50529290|50529658 hsa-miR-4758-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6799-3p 0 1 0
chr22:50529290|50529658 hsa-miR-4665-5p 1 0 0
chr22:50529290|50529658 hsa-miR-6877-3p 1 0 0
chr22:50529290|50529658 hsa-miR-5591-5p 0 1 0
chr22:50529290|50529658 hsa-miR-10398-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6791-5p 1 1 0
chr22:50529290|50529658 hsa-miR-4757-5p 0 1 0
chr22:50529290|50529658 hsa-miR-6792-3p 0 1 0
chr22:50529290|50529658 hsa-miR-10400-3p 0 1 0
chr22:50529290|50529658 hsa-miR-6511b-3p 1 0 0
chr22:50529290|50529658 hsa-miR-4691-5p 1 1 0
chr22:50529290|50529658 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:50529290|50529658
ORF Type ORF1
Protein Length 102
Nucleotide Length 306
Protein Sequence MIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAWGGLGVPDPDWEVSPRDFGSLGVRRCPTTSTGPRVPHRCGLPPSRVPPHTRGHADGHPTSGHGSGGD
Nucleotide Sequence CTGATCCGCATGAAGCGAGACGGAGGCCGCCTGAGCGAAGCGGACATCAGGGGCTTCGTGGCCGCTGTGGTGAATGGGAGCGCGCAGGGCGCACAGATCGGTGCGTGGGGAGGGTTGGGCGTTCCTGACCCCGACTGGGAGGTCAGCCCGAGAGACTTTGGGTCCCTGGGGGTGCGACGGTGCCCCACTACCAGCACCGGCCCCAGGGTGCCCCACCGCTGTGGGCTGCCACCCTCACGCGTACCCCCACATACCAGGGGCCATGCTGATGGCCATCCGACTTCGGGGCATGGATCTGGAGGAGAC
CircID chr22:50529290|50529658
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MGARRAHRSVRGEGWAFLTPTGRSARETLGPWGCDGAPLPAPAPGCPTAVGCHPHAYPHIPGAMLMAIRLRGMDLEE
Nucleotide Sequence ATGGGAGCGCGCAGGGCGCACAGATCGGTGCGTGGGGAGGGTTGGGCGTTCCTGACCCCGACTGGGAGGTCAGCCCGAGAGACTTTGGGTCCCTGGGGGTGCGACGGTGCCCCACTACCAGCACCGGCCCCAGGGTGCCCCACCGCTGTGGGCTGCCACCCTCACGCGTACCCCCACATACCAGGGGCCATGCTGATGGCCATCCGACTTCGGGGCATGGATCTGGAGGAG
CircID chr22:50529290|50529658
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MGGQPERLWVPGGATVPHYQHRPQGAPPLWAATLTRTPTYQGPC
Nucleotide Sequence CTGGGAGGTCAGCCCGAGAGACTTTGGGTCCCTGGGGGTGCGACGGTGCCCCACTACCAGCACCGGCCCCAGGGTGCCCCACCGCTGTGGGCTGCCACCCTCACGCGTACCCCCACATACCAGGGGCCATGCTGA
CircID chr22:50529290|50529658
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MCALRAPIHHSGHEAPDVRFAQAASVSLHADQLRELLGLWRRVGKSLAPFPGE
Nucleotide Sequence CTGTGCGCCCTGCGCGCTCCCATTCACCACAGCGGCCACGAAGCCCCTGATGTCCGCTTCGCTCAGGCGGCCTCCGTCTCGCTTCATGCGGATCAGCTCCGGGAGCTGCTTGGGCTCTGGCGAAGGGTCGGGAAGTCCCTGGCTCCCTTCCCCGGAGAA
CircID chr22:50529290|50529658
ORF Type ORF5
Protein Length 106
Nucleotide Length 318
Protein Sequence MVCGGTREGGSPQRWGTLGPVLVVGHRRTPRDPKSLGLTSQSGSGTPNPPHAPICAPCALPFTTAATKPLMSASLRRPPSRFMRISSGSCLGSGEGSGSPWLPSPE
Nucleotide Sequence CTGGTATGTGGGGGTACGCGTGAGGGTGGCAGCCCACAGCGGTGGGGCACCCTGGGGCCGGTGCTGGTAGTGGGGCACCGTCGCACCCCCAGGGACCCAAAGTCTCTCGGGCTGACCTCCCAGTCGGGGTCAGGAACGCCCAACCCTCCCCACGCACCGATCTGTGCGCCCTGCGCGCTCCCATTCACCACAGCGGCCACGAAGCCCCTGATGTCCGCTTCGCTCAGGCGGCCTCCGTCTCGCTTCATGCGGATCAGCTCCGGGAGCTGCTTGGGCTCTGGCGAAGGGTCGGGAAGTCCCTGGCTCCCTTCCCCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab