CircRNA Information

General Information
circRNA Basic Information
CircID chr22:50533221|50533366
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGTGTCTGAGGAGTTTTGTCTGCGGCTCTTCCTGCTACAGTTTGTAACCAGATTATTTCTGACAAGTTTTGATCCAGGGTTTTTTTTTAAAGATTTGTCAATTTCAAAATATTTGTTTGCTCCTGCTTCCTGTTCTCTCTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:50533221|50533366 hsa-miR-185-5p 0 0 1
chr22:50533221|50533366 hsa-miR-185-3p 0 0 1
chr22:50533221|50533366 hsa-miR-1323 0 0 1
chr22:50533221|50533366 hsa-miR-1183 0 0 1
chr22:50533221|50533366 hsa-miR-548g-5p 0 0 1
chr22:50533221|50533366 hsa-miR-548g-3p 0 0 1
chr22:50533221|50533366 hsa-miR-548o-3p 0 0 1
chr22:50533221|50533366 hsa-miR-1324 0 1 1
chr22:50533221|50533366 hsa-miR-548o 0 0 1
chr22:50533221|50533366 hsa-miR-409-5p 0 0 1
chr22:50533221|50533366 hsa-miR-524-5p 0 0 1
chr22:50533221|50533366 hsa-miR-548d-3p 0 0 1
chr22:50533221|50533366 hsa-miR-520d-5p 0 0 1
chr22:50533221|50533366 hsa-miR-203 0 0 1
chr22:50533221|50533366 hsa-miR-3137 0 1 0
chr22:50533221|50533366 hsa-miR-3138 1 0 0
chr22:50533221|50533366 hsa-miR-3154 1 0 0
chr22:50533221|50533366 hsa-miR-3166 0 1 0
chr22:50533221|50533366 hsa-miR-4270 1 0 0
chr22:50533221|50533366 hsa-miR-3918 1 0 0
chr22:50533221|50533366 hsa-miR-4430 1 0 0
chr22:50533221|50533366 hsa-miR-4510 1 0 0
chr22:50533221|50533366 hsa-miR-3976 1 0 0
chr22:50533221|50533366 hsa-miR-4644 1 1 0
chr22:50533221|50533366 hsa-miR-4681 1 0 0
chr22:50533221|50533366 hsa-miR-4698 0 1 0
chr22:50533221|50533366 hsa-miR-4739 1 0 0
chr22:50533221|50533366 hsa-miR-5739 1 0 0
chr22:50533221|50533366 hsa-miR-6077 0 1 0
chr22:50533221|50533366 hsa-miR-6090 1 0 0
chr22:50533221|50533366 hsa-miR-6124 1 0 0
chr22:50533221|50533366 hsa-miR-6127 1 0 0
chr22:50533221|50533366 hsa-miR-6133 1 0 0
chr22:50533221|50533366 hsa-miR-6165 1 0 0
chr22:50533221|50533366 hsa-miR-8060 1 0 0
chr22:50533221|50533366 hsa-miR-8085 1 1 0
chr22:50533221|50533366 hsa-miR-4786-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6873-5p 1 1 0
chr22:50533221|50533366 hsa-miR-4695-5p 1 1 0
chr22:50533221|50533366 hsa-miR-6746-5p 1 0 0
chr22:50533221|50533366 hsa-miR-4722-5p 1 0 0
chr22:50533221|50533366 hsa-miR-3126-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6760-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6847-5p 1 0 0
chr22:50533221|50533366 hsa-miR-3925-5p 1 1 0
chr22:50533221|50533366 hsa-miR-6828-5p 0 1 0
chr22:50533221|50533366 hsa-miR-6878-5p 1 0 0
chr22:50533221|50533366 hsa-miR-4773 0 1 0
chr22:50533221|50533366 hsa-miR-6767-5p 0 1 0
chr22:50533221|50533366 hsa-miR-6726-5p 1 0 0
chr22:50533221|50533366 hsa-miR-1249-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6797-5p 0 1 0
chr22:50533221|50533366 hsa-miR-6875-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6831-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6731-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6758-5p 1 1 0
chr22:50533221|50533366 hsa-miR-6856-5p 1 0 0
chr22:50533221|50533366 hsa-miR-6750-5p 1 0 0
chr22:50533221|50533366 hsa-miR-3184-5p 0 1 0
chr22:50533221|50533366 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:50533221|50533366
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence LVSEEFCLRLFLLQFVTRLFLTSFDPGFFFKDLSISKYLFAPASCSLS
Nucleotide Sequence CTGGTGTCTGAGGAGTTTTGTCTGCGGCTCTTCCTGCTACAGTTTGTAACCAGATTATTTCTGACAAGTTTTGATCCAGGGTTTTTTTTTAAAGATTTGTCAATTTCAAAATATTTGTTTGCTCCTGCTTCCTGTTCTCTCTCT
CircID chr22:50533221|50533366
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MIQGFFLKICQFQNICLLLLPVLSL
Nucleotide Sequence TTGATCCAGGGTTTTTTTTTAAAGATTTGTCAATTTCAAAATATTTGTTTGCTCCTGCTTCCTGTTCTCTCTCTC
CircID chr22:50533221|50533366
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MDQNLSEIIWLQTVAGRAADKTPQTP
Nucleotide Sequence CTGGATCAAAACTTGTCAGAAATAATCTGGTTACAAACTGTAGCAGGAAGAGCCGCAGACAAAACTCCTCAGACACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab