CircRNA Information

General Information
circRNA Basic Information
CircID chr2:10048346|10048492
Strand +
CircType exon
Host Gene ENSG00000172059.9;
Algorism CIRI2;
Sequence CTGAGGGACACAGTTTTGGCTAGAGGTGATGAACACTGGAGCAGGGGCAAGGGGCAACAACTTGGTATTCCCGGCAGCCATGACATTGGCTGCACAGGGGGCAGGCGGAGGGAGGGCTCCCTGGGGCAGGACCAACATCACAGCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:10048346|10048492 hsa-miR-382-5p 0 0 1
chr2:10048346|10048492 hsa-miR-382-3p 0 0 1
chr2:10048346|10048492 hsa-miR-133b 0 1 1
chr2:10048346|10048492 hsa-miR-604 0 0 1
chr2:10048346|10048492 hsa-miR-647 0 0 1
chr2:10048346|10048492 hsa-miR-1323 0 0 1
chr2:10048346|10048492 hsa-miR-892a 0 1 1
chr2:10048346|10048492 hsa-miR-1206 0 0 1
chr2:10048346|10048492 hsa-miR-548e-5p 0 0 1
chr2:10048346|10048492 hsa-miR-548e-3p 0 0 1
chr2:10048346|10048492 hsa-miR-1251-5p 0 0 1
chr2:10048346|10048492 hsa-miR-1251-3p 0 0 1
chr2:10048346|10048492 hsa-miR-548g-5p 0 0 1
chr2:10048346|10048492 hsa-miR-548g-3p 0 0 1
chr2:10048346|10048492 hsa-miR-548o-3p 0 0 1
chr2:10048346|10048492 hsa-miR-1825 0 0 1
chr2:10048346|10048492 hsa-miR-548o 0 0 1
chr2:10048346|10048492 hsa-miR-199a-5p 0 1 1
chr2:10048346|10048492 hsa-miR-199b-5p 0 1 1
chr2:10048346|10048492 hsa-miR-324-3p 0 0 1
chr2:10048346|10048492 hsa-miR-548a-3p 0 0 1
chr2:10048346|10048492 hsa-miR-1233 0 0 1
chr2:10048346|10048492 hsa-miR-548f 0 0 1
chr2:10048346|10048492 hsa-miR-133a 0 0 1
chr2:10048346|10048492 hsa-miR-346 1 0 0
chr2:10048346|10048492 hsa-miR-1470 0 1 0
chr2:10048346|10048492 hsa-miR-1913 1 1 0
chr2:10048346|10048492 hsa-miR-548s 0 1 0
chr2:10048346|10048492 hsa-miR-4313 0 1 0
chr2:10048346|10048492 hsa-miR-4290 0 1 0
chr2:10048346|10048492 hsa-miR-7974 1 1 0
chr2:10048346|10048492 hsa-miR-6749-3p 1 1 0
chr2:10048346|10048492 hsa-miR-18a-3p 1 1 0
chr2:10048346|10048492 hsa-miR-4726-3p 1 0 0
chr2:10048346|10048492 hsa-miR-1233-3p 0 1 0
chr2:10048346|10048492 hsa-miR-210-5p 1 1 0
chr2:10048346|10048492 hsa-miR-1225-3p 1 0 0
chr2:10048346|10048492 hsa-miR-3189-5p 1 0 0
chr2:10048346|10048492 hsa-miR-1915-5p 1 1 0
chr2:10048346|10048492 hsa-miR-6845-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6882-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6772-3p 1 0 0
chr2:10048346|10048492 hsa-miR-4763-5p 1 1 0
chr2:10048346|10048492 hsa-miR-7113-3p 1 0 0
chr2:10048346|10048492 hsa-miR-889-5p 0 1 0
chr2:10048346|10048492 hsa-miR-4667-3p 0 1 0
chr2:10048346|10048492 hsa-miR-146b-3p 0 1 0
chr2:10048346|10048492 hsa-miR-3925-3p 0 1 0
chr2:10048346|10048492 hsa-miR-4781-3p 0 1 0
chr2:10048346|10048492 hsa-miR-6811-3p 1 0 0
chr2:10048346|10048492 hsa-miR-7106-3p 1 0 0
chr2:10048346|10048492 hsa-miR-4687-5p 1 1 0
chr2:10048346|10048492 hsa-miR-6887-3p 0 1 0
chr2:10048346|10048492 hsa-miR-6886-3p 1 1 0
chr2:10048346|10048492 hsa-miR-4749-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6851-3p 1 0 0
chr2:10048346|10048492 hsa-miR-1287-3p 0 1 0
chr2:10048346|10048492 hsa-miR-6734-3p 0 1 0
chr2:10048346|10048492 hsa-miR-3157-3p 1 0 0
chr2:10048346|10048492 hsa-miR-4485-5p 0 1 0
chr2:10048346|10048492 hsa-miR-3152-5p 0 1 0
chr2:10048346|10048492 hsa-miR-133a-3p 0 1 0
chr2:10048346|10048492 hsa-miR-744-3p 0 1 0
chr2:10048346|10048492 hsa-miR-3127-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6877-3p 1 0 0
chr2:10048346|10048492 hsa-miR-4722-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6893-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6756-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6801-3p 1 0 0
chr2:10048346|10048492 hsa-miR-6810-3p 1 1 0
chr2:10048346|10048492 hsa-miR-4662a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:10048346|10048492
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence LRDTVLARGDEHWSRGKGQQLGIPGSHDIGCTGGRRREGSLGQDQHHSS
Nucleotide Sequence CTGAGGGACACAGTTTTGGCTAGAGGTGATGAACACTGGAGCAGGGGCAAGGGGCAACAACTTGGTATTCCCGGCAGCCATGACATTGGCTGCACAGGGGGCAGGCGGAGGGAGGGCTCCCTGGGGCAGGACCAACATCACAGCTCC
CircID chr2:10048346|10048492
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MNTGAGARGNNLVFPAAMTLAAQGAGGGRAPWGRTNITA
Nucleotide Sequence ATGAACACTGGAGCAGGGGCAAGGGGCAACAACTTGGTATTCCCGGCAGCCATGACATTGGCTGCACAGGGGGCAGGCGGAGGGAGGGCTCCCTGGGGCAGGACCAACATCACAGCT
CircID chr2:10048346|10048492
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MLVLPQGALPPPAPCAANVMAAGNTKLLPLAPAPVFITSSQNCVPQ
Nucleotide Sequence ATGTTGGTCCTGCCCCAGGGAGCCCTCCCTCCGCCTGCCCCCTGTGCAGCCAATGTCATGGCTGCCGGGAATACCAAGTTGTTGCCCCTTGCCCCTGCTCCAGTGTTCATCACCTCTAGCCAAAACTGTGTCCCTCAG
CircID chr2:10048346|10048492
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MPPVQPMSWLPGIPSCCPLPLLQCSSPLAKTVSL
Nucleotide Sequence CTGCCCCCTGTGCAGCCAATGTCATGGCTGCCGGGAATACCAAGTTGTTGCCCCTTGCCCCTGCTCCAGTGTTCATCACCTCTAGCCAAAACTGTGTCCCTC
CircID chr2:10048346|10048492
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MCSQCHGCREYQVVAPCPCSSVHHL
Nucleotide Sequence CTGTGCAGCCAATGTCATGGCTGCCGGGAATACCAAGTTGTTGCCCCTTGCCCCTGCTCCAGTGTTCATCACCTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab