CircRNA Information

General Information
circRNA Basic Information
CircID chr2:101217982|101218158
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCTCTTTCACCAGGATAGCTCTCCTTTTATCTGGTTTACATGCTTTTTTTTCCAAGCTGGAGTCTCACTATGTTGCCAGGCTGGTCTCAGATTCCTGAGCTCAAGGGATCTTCCTACTTCAGCCTCTTGAGAAGCTGGGACAACAGGTGTGTACCACCGTGCCCAGCTCACATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:101217982|101218158 hsa-miR-30a-5p 0 0 1
chr2:101217982|101218158 hsa-miR-30a-3p 0 0 1
chr2:101217982|101218158 hsa-miR-30d-5p 0 0 1
chr2:101217982|101218158 hsa-miR-30d-3p 0 0 1
chr2:101217982|101218158 hsa-miR-30b-5p 0 0 1
chr2:101217982|101218158 hsa-miR-30b-3p 0 0 1
chr2:101217982|101218158 hsa-miR-30e-5p 0 0 1
chr2:101217982|101218158 hsa-miR-30e-3p 0 0 1
chr2:101217982|101218158 hsa-miR-335-5p 0 0 1
chr2:101217982|101218158 hsa-miR-335-3p 0 0 1
chr2:101217982|101218158 hsa-miR-558 0 0 1
chr2:101217982|101218158 hsa-miR-564 0 1 1
chr2:101217982|101218158 hsa-miR-577 0 0 1
chr2:101217982|101218158 hsa-miR-583 0 0 1
chr2:101217982|101218158 hsa-miR-603 0 0 1
chr2:101217982|101218158 hsa-miR-612 0 1 1
chr2:101217982|101218158 hsa-miR-623 0 0 1
chr2:101217982|101218158 hsa-miR-766-5p 0 0 1
chr2:101217982|101218158 hsa-miR-766-3p 0 0 1
chr2:101217982|101218158 hsa-miR-873-5p 0 0 1
chr2:101217982|101218158 hsa-miR-873-3p 0 0 1
chr2:101217982|101218158 hsa-miR-921 0 0 1
chr2:101217982|101218158 hsa-miR-1228-5p 0 0 1
chr2:101217982|101218158 hsa-miR-1228-3p 0 0 1
chr2:101217982|101218158 hsa-miR-513c-5p 0 0 1
chr2:101217982|101218158 hsa-miR-513c-3p 0 0 1
chr2:101217982|101218158 hsa-miR-769-5p 0 0 1
chr2:101217982|101218158 hsa-miR-485-5p 0 0 1
chr2:101217982|101218158 hsa-miR-508-5p 0 0 1
chr2:101217982|101218158 hsa-miR-188-5p 0 0 1
chr2:101217982|101218158 hsa-miR-362-3p 0 0 1
chr2:101217982|101218158 hsa-miR-30c 0 0 1
chr2:101217982|101218158 hsa-miR-1285 0 0 1
chr2:101217982|101218158 hsa-miR-329 0 0 1
chr2:101217982|101218158 hsa-miR-665 1 0 0
chr2:101217982|101218158 hsa-miR-3128 0 1 0
chr2:101217982|101218158 hsa-miR-4299 0 1 0
chr2:101217982|101218158 hsa-miR-4322 0 1 0
chr2:101217982|101218158 hsa-miR-3929 0 1 0
chr2:101217982|101218158 hsa-miR-1587 0 1 0
chr2:101217982|101218158 hsa-miR-4656 1 0 0
chr2:101217982|101218158 hsa-miR-4721 1 0 0
chr2:101217982|101218158 hsa-miR-4780 0 1 0
chr2:101217982|101218158 hsa-miR-5192 1 0 0
chr2:101217982|101218158 hsa-miR-6073 0 1 0
chr2:101217982|101218158 hsa-miR-6860 0 1 0
chr2:101217982|101218158 hsa-miR-8073 0 1 0
chr2:101217982|101218158 hsa-miR-150-3p 0 1 0
chr2:101217982|101218158 hsa-miR-6854-5p 0 1 0
chr2:101217982|101218158 hsa-miR-4786-5p 1 1 0
chr2:101217982|101218158 hsa-miR-593-5p 1 0 0
chr2:101217982|101218158 hsa-miR-4776-5p 1 0 0
chr2:101217982|101218158 hsa-miR-6866-5p 0 1 0
chr2:101217982|101218158 hsa-miR-3200-5p 0 1 0
chr2:101217982|101218158 hsa-miR-3664-3p 0 1 0
chr2:101217982|101218158 hsa-miR-221-5p 0 1 0
chr2:101217982|101218158 hsa-miR-1343-5p 1 0 0
chr2:101217982|101218158 hsa-miR-7107-5p 1 0 0
chr2:101217982|101218158 hsa-miR-5189-5p 0 1 0
chr2:101217982|101218158 hsa-miR-4745-3p 1 0 0
chr2:101217982|101218158 hsa-miR-3187-5p 0 1 0
chr2:101217982|101218158 hsa-miR-939-5p 1 0 0
chr2:101217982|101218158 hsa-miR-1285-3p 0 1 0
chr2:101217982|101218158 hsa-miR-3116 1 0 0
chr2:101217982|101218158 hsa-miR-342-5p 1 0 0
chr2:101217982|101218158 hsa-miR-9851-3p 1 0 0
chr2:101217982|101218158 hsa-miR-6884-5p 0 1 0
chr2:101217982|101218158 hsa-miR-329-3p 0 1 0
chr2:101217982|101218158 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:101217982|101218158
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MVYMLFFPSWSLTMLPGWSQIPELKGSSYFSLLRSWDNRCVPPCPAHI
Nucleotide Sequence CTGGTTTACATGCTTTTTTTTCCAAGCTGGAGTCTCACTATGTTGCCAGGCTGGTCTCAGATTCCTGAGCTCAAGGGATCTTCCTACTTCAGCCTCTTGAGAAGCTGGGACAACAGGTGTGTACCACCGTGCCCAGCTCACATT
CircID chr2:101217982|101218158
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MRPAWQHSETPAWKKKHVNQIKGELSW
Nucleotide Sequence CTGAGACCAGCCTGGCAACATAGTGAGACTCCAGCTTGGAAAAAAAAGCATGTAAACCAGATAAAAGGAGAGCTATCCTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab