CircRNA Information

General Information
circRNA Basic Information
CircID chr2:105881735|105881860
Strand +
CircType exon
Host Gene ENSG00000071051.12;
Algorism CIRI2;
Sequence CACCACGTAGTTTTTGGGGACGAGGCCCACCTGGCCCCGGGCATTTTTGCATTTCCACCACTCGGGGTCGTTCTCCGGCTTCTCAATCACCTCCATGGTCTCCCCCTTCTCGAAGTTGAGCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:105881735|105881860 hsa-miR-580-5p 0 0 1
chr2:105881735|105881860 hsa-miR-580-3p 0 0 1
chr2:105881735|105881860 hsa-miR-591 0 0 1
chr2:105881735|105881860 hsa-miR-541-5p 0 0 1
chr2:105881735|105881860 hsa-miR-541-3p 0 0 1
chr2:105881735|105881860 hsa-miR-708-5p 0 0 1
chr2:105881735|105881860 hsa-miR-708-3p 0 0 1
chr2:105881735|105881860 hsa-miR-1253 0 0 1
chr2:105881735|105881860 hsa-miR-654-5p 0 0 1
chr2:105881735|105881860 hsa-miR-28-5p 0 1 1
chr2:105881735|105881860 hsa-miR-1300 0 0 1
chr2:105881735|105881860 hsa-miR-365 0 0 1
chr2:105881735|105881860 hsa-miR-765 1 0 0
chr2:105881735|105881860 hsa-miR-665 1 0 0
chr2:105881735|105881860 hsa-miR-1275 1 0 0
chr2:105881735|105881860 hsa-miR-1471 1 0 0
chr2:105881735|105881860 hsa-miR-3139 1 1 0
chr2:105881735|105881860 hsa-miR-3154 1 1 0
chr2:105881735|105881860 hsa-miR-3175 0 1 0
chr2:105881735|105881860 hsa-miR-3135b 1 0 0
chr2:105881735|105881860 hsa-miR-4516 1 0 0
chr2:105881735|105881860 hsa-miR-4525 1 0 0
chr2:105881735|105881860 hsa-miR-4688 1 0 0
chr2:105881735|105881860 hsa-miR-4706 1 0 0
chr2:105881735|105881860 hsa-miR-4739 1 0 0
chr2:105881735|105881860 hsa-miR-5093 0 1 0
chr2:105881735|105881860 hsa-miR-5698 1 1 0
chr2:105881735|105881860 hsa-miR-6085 1 0 0
chr2:105881735|105881860 hsa-miR-3150a-3p 1 1 0
chr2:105881735|105881860 hsa-miR-6854-5p 1 1 0
chr2:105881735|105881860 hsa-miR-6799-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6510-5p 1 0 0
chr2:105881735|105881860 hsa-miR-139-3p 1 0 0
chr2:105881735|105881860 hsa-miR-4786-5p 0 1 0
chr2:105881735|105881860 hsa-miR-6089 1 0 0
chr2:105881735|105881860 hsa-miR-6721-5p 1 0 0
chr2:105881735|105881860 hsa-miR-1292-5p 1 0 0
chr2:105881735|105881860 hsa-miR-3180-3p 1 0 0
chr2:105881735|105881860 hsa-miR-6732-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6805-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6798-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6782-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6821-5p 1 0 0
chr2:105881735|105881860 hsa-miR-5088-5p 1 0 0
chr2:105881735|105881860 hsa-miR-7109-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6784-5p 0 1 0
chr2:105881735|105881860 hsa-miR-4640-5p 0 1 0
chr2:105881735|105881860 hsa-miR-1908-5p 1 0 0
chr2:105881735|105881860 hsa-miR-4787-5p 1 0 0
chr2:105881735|105881860 hsa-miR-2681-3p 0 1 0
chr2:105881735|105881860 hsa-miR-149-3p 1 0 0
chr2:105881735|105881860 hsa-miR-6812-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6870-5p 1 1 0
chr2:105881735|105881860 hsa-miR-1343-5p 1 0 0
chr2:105881735|105881860 hsa-miR-3180 1 0 0
chr2:105881735|105881860 hsa-miR-6743-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6752-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6756-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6803-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6842-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6851-5p 1 1 0
chr2:105881735|105881860 hsa-miR-7110-5p 1 0 0
chr2:105881735|105881860 hsa-miR-7111-5p 1 0 0
chr2:105881735|105881860 hsa-miR-5196-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6780b-5p 1 0 0
chr2:105881735|105881860 hsa-miR-10392-5p 1 0 0
chr2:105881735|105881860 hsa-miR-328-5p 1 0 0
chr2:105881735|105881860 hsa-miR-4726-5p 0 1 0
chr2:105881735|105881860 hsa-miR-4745-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6794-5p 1 1 0
chr2:105881735|105881860 hsa-miR-6795-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6887-5p 1 1 0
chr2:105881735|105881860 hsa-miR-4723-5p 1 1 0
chr2:105881735|105881860 hsa-miR-939-5p 1 0 0
chr2:105881735|105881860 hsa-miR-4758-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6758-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6891-5p 1 0 0
chr2:105881735|105881860 hsa-miR-4716-3p 1 1 0
chr2:105881735|105881860 hsa-miR-6785-5p 1 0 0
chr2:105881735|105881860 hsa-miR-6762-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:105881735|105881860
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MAPGIFAFPPLGVVLRLLNHLHGLPLLEVELL
Nucleotide Sequence CTGGCCCCGGGCATTTTTGCATTTCCACCACTCGGGGTCGTTCTCCGGCTTCTCAATCACCTCCATGGTCTCCCCCTTCTCGAAGTTGAGCTCCTC
CircID chr2:105881735|105881860
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MGTRPTWPRAFLHFHHSGSFSGFSITSMVSPFSKLSS
Nucleotide Sequence TTGGGGACGAGGCCCACCTGGCCCCGGGCATTTTTGCATTTCCACCACTCGGGGTCGTTCTCCGGCTTCTCAATCACCTCCATGGTCTCCCCCTTCTCGAAGTTGAGCTCC
CircID chr2:105881735|105881860
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MEVIEKPENDPEWWKCKNARGQVGLVPKNYVV
Nucleotide Sequence ATGGAGGTGATTGAGAAGCCGGAGAACGACCCCGAGTGGTGGAAATGCAAAAATGCCCGGGGCCAGGTGGGCCTCGTCCCCAAAAACTACGTGGTG
CircID chr2:105881735|105881860
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MRSRRTTPSGGNAKMPGARWASSPKTTW
Nucleotide Sequence TTGAGAAGCCGGAGAACGACCCCGAGTGGTGGAAATGCAAAAATGCCCGGGGCCAGGTGGGCCTCGTCCCCAAAAACTACGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab