CircRNA Information

General Information
circRNA Basic Information
CircID chr2:10794949|10795120
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCACAAAATATATTACAGCAACTCTCAGCATCTATTCAGATAATCTTGCACTGTATCGCTGGCTGAGCCTACCAAGTATGTCACTTGATAACACAGAAGGGCAAGGCCTCAACATGAAACAGCCTCTGCTCCTTATCTATGTCAGGTATTTCCGTCATCTGAACCACTGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:10794949|10795120 hsa-miR-148a-5p 0 0 1
chr2:10794949|10795120 hsa-miR-148a-3p 0 0 1
chr2:10794949|10795120 hsa-miR-34a-5p 0 0 1
chr2:10794949|10795120 hsa-miR-34a-3p 0 0 1
chr2:10794949|10795120 hsa-miR-130a-5p 0 0 1
chr2:10794949|10795120 hsa-miR-130a-3p 0 0 1
chr2:10794949|10795120 hsa-miR-152-5p 0 0 1
chr2:10794949|10795120 hsa-miR-152-3p 0 0 1
chr2:10794949|10795120 hsa-miR-301a-5p 0 0 1
chr2:10794949|10795120 hsa-miR-301a-3p 0 0 1
chr2:10794949|10795120 hsa-miR-130b-5p 0 0 1
chr2:10794949|10795120 hsa-miR-130b-3p 0 0 1
chr2:10794949|10795120 hsa-miR-376c-5p 0 0 1
chr2:10794949|10795120 hsa-miR-376c-3p 0 0 1
chr2:10794949|10795120 hsa-miR-148b-5p 0 0 1
chr2:10794949|10795120 hsa-miR-148b-3p 0 0 1
chr2:10794949|10795120 hsa-miR-449a 0 0 1
chr2:10794949|10795120 hsa-miR-577 0 0 1
chr2:10794949|10795120 hsa-miR-449b-5p 0 0 1
chr2:10794949|10795120 hsa-miR-449b-3p 0 0 1
chr2:10794949|10795120 hsa-miR-454-5p 0 0 1
chr2:10794949|10795120 hsa-miR-454-3p 0 0 1
chr2:10794949|10795120 hsa-miR-874-5p 0 0 1
chr2:10794949|10795120 hsa-miR-874-3p 0 0 1
chr2:10794949|10795120 hsa-miR-890 0 0 1
chr2:10794949|10795120 hsa-miR-301b-5p 0 0 1
chr2:10794949|10795120 hsa-miR-301b-3p 0 0 1
chr2:10794949|10795120 hsa-miR-938 0 0 1
chr2:10794949|10795120 hsa-miR-1237-5p 0 0 1
chr2:10794949|10795120 hsa-miR-1237-3p 0 0 1
chr2:10794949|10795120 hsa-miR-1304-5p 0 0 1
chr2:10794949|10795120 hsa-miR-1304-3p 0 0 1
chr2:10794949|10795120 hsa-miR-140-5p 0 0 1
chr2:10794949|10795120 hsa-miR-485-5p 0 1 1
chr2:10794949|10795120 hsa-miR-34c-5p 1 1 1
chr2:10794949|10795120 hsa-miR-24 0 0 1
chr2:10794949|10795120 hsa-miR-4322 1 0 0
chr2:10794949|10795120 hsa-miR-3666 1 1 0
chr2:10794949|10795120 hsa-miR-4427 1 1 0
chr2:10794949|10795120 hsa-miR-4467 1 0 0
chr2:10794949|10795120 hsa-miR-4526 1 0 0
chr2:10794949|10795120 hsa-miR-4656 1 0 0
chr2:10794949|10795120 hsa-miR-4681 1 0 0
chr2:10794949|10795120 hsa-miR-4739 1 0 0
chr2:10794949|10795120 hsa-miR-4784 1 0 0
chr2:10794949|10795120 hsa-miR-5706 0 1 0
chr2:10794949|10795120 hsa-miR-6081 1 0 0
chr2:10794949|10795120 hsa-miR-3157-5p 0 1 0
chr2:10794949|10795120 hsa-miR-125a-3p 0 1 0
chr2:10794949|10795120 hsa-miR-24-3p 1 1 0
chr2:10794949|10795120 hsa-miR-1915-5p 0 1 0
chr2:10794949|10795120 hsa-miR-4691-3p 1 0 0
chr2:10794949|10795120 hsa-miR-885-3p 1 0 0
chr2:10794949|10795120 hsa-miR-3677-3p 1 0 0
chr2:10794949|10795120 hsa-miR-5585-3p 0 1 0
chr2:10794949|10795120 hsa-miR-1245b-3p 0 1 0
chr2:10794949|10795120 hsa-miR-4763-3p 1 0 0
chr2:10794949|10795120 hsa-miR-6787-5p 1 0 0
chr2:10794949|10795120 hsa-miR-6743-5p 1 0 0
chr2:10794949|10795120 hsa-miR-6851-5p 1 0 0
chr2:10794949|10795120 hsa-miR-6722-3p 1 0 0
chr2:10794949|10795120 hsa-miR-449c-5p 1 0 0
chr2:10794949|10795120 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:10794949|10795120
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MYRWLSLPSMSLDNTEGQGLNMKQPLLLIYVRYFRHLNHC
Nucleotide Sequence CTGTATCGCTGGCTGAGCCTACCAAGTATGTCACTTGATAACACAGAAGGGCAAGGCCTCAACATGAAACAGCCTCTGCTCCTTATCTATGTCAGGTATTTCCGTCATCTGAACCACTGC
CircID chr2:10794949|10795120
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLRPCPSVLSSDILGRLSQRYSARLSE
Nucleotide Sequence ATGTTGAGGCCTTGCCCTTCTGTGTTATCAAGTGACATACTTGGTAGGCTCAGCCAGCGATACAGTGCAAGATTATCTGAATAG
CircID chr2:10794949|10795120
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MTEIPDIDKEQRLFHVEALPFCVIK
Nucleotide Sequence ATGACGGAAATACCTGACATAGATAAGGAGCAGAGGCTGTTTCATGTTGAGGCCTTGCCCTTCTGTGTTATCAAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab