CircRNA Information

General Information
circRNA Basic Information
CircID chr2:108789502|108789718
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCTTCAATCTCTCTCAATCACCTAAATACAATGCATACAATACCAGACACACCAGAGATAGTAAAATGCTGCTGCCTAACAAAACCTGTATGGCAGTTTTTTTTGTAGTTCGTTTTTTCTTTCTTCAGGACAGTTTTGCTCATCACCCAGGCTGGAGTGCAATGGCACAATCTTAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:108789502|108789718 hsa-miR-15a-5p 0 0 1
chr2:108789502|108789718 hsa-miR-15a-3p 0 0 1
chr2:108789502|108789718 hsa-miR-25-5p 0 0 1
chr2:108789502|108789718 hsa-miR-25-3p 0 0 1
chr2:108789502|108789718 hsa-miR-32-5p 0 0 1
chr2:108789502|108789718 hsa-miR-32-3p 0 0 1
chr2:108789502|108789718 hsa-miR-33a-5p 0 0 1
chr2:108789502|108789718 hsa-miR-33a-3p 0 0 1
chr2:108789502|108789718 hsa-miR-107 0 1 1
chr2:108789502|108789718 hsa-miR-15b-5p 0 0 1
chr2:108789502|108789718 hsa-miR-15b-3p 0 0 1
chr2:108789502|108789718 hsa-miR-195-5p 0 0 1
chr2:108789502|108789718 hsa-miR-195-3p 0 0 1
chr2:108789502|108789718 hsa-miR-34b-5p 0 0 1
chr2:108789502|108789718 hsa-miR-34b-3p 0 0 1
chr2:108789502|108789718 hsa-miR-363-5p 0 0 1
chr2:108789502|108789718 hsa-miR-363-3p 0 0 1
chr2:108789502|108789718 hsa-miR-367-5p 0 0 1
chr2:108789502|108789718 hsa-miR-367-3p 0 0 1
chr2:108789502|108789718 hsa-miR-326 0 0 1
chr2:108789502|108789718 hsa-miR-424-5p 0 0 1
chr2:108789502|108789718 hsa-miR-424-3p 0 0 1
chr2:108789502|108789718 hsa-miR-497-5p 0 0 1
chr2:108789502|108789718 hsa-miR-497-3p 0 0 1
chr2:108789502|108789718 hsa-miR-552-5p 0 0 1
chr2:108789502|108789718 hsa-miR-552-3p 0 0 1
chr2:108789502|108789718 hsa-miR-92b-5p 0 0 1
chr2:108789502|108789718 hsa-miR-92b-3p 0 0 1
chr2:108789502|108789718 hsa-miR-586 1 1 1
chr2:108789502|108789718 hsa-miR-610 0 1 1
chr2:108789502|108789718 hsa-miR-33b-5p 0 0 1
chr2:108789502|108789718 hsa-miR-33b-3p 0 0 1
chr2:108789502|108789718 hsa-miR-661 0 0 1
chr2:108789502|108789718 hsa-miR-1323 0 0 1
chr2:108789502|108789718 hsa-miR-766-5p 0 0 1
chr2:108789502|108789718 hsa-miR-766-3p 0 0 1
chr2:108789502|108789718 hsa-miR-940 0 0 1
chr2:108789502|108789718 hsa-miR-297 0 0 1
chr2:108789502|108789718 hsa-miR-1227-5p 0 0 1
chr2:108789502|108789718 hsa-miR-1227-3p 0 0 1
chr2:108789502|108789718 hsa-miR-1231 0 0 1
chr2:108789502|108789718 hsa-miR-548e-5p 0 0 1
chr2:108789502|108789718 hsa-miR-548e-3p 0 0 1
chr2:108789502|108789718 hsa-miR-1258 0 0 1
chr2:108789502|108789718 hsa-miR-548g-5p 0 0 1
chr2:108789502|108789718 hsa-miR-548g-3p 0 0 1
chr2:108789502|108789718 hsa-miR-1262 0 0 1
chr2:108789502|108789718 hsa-miR-548o-3p 0 0 1
chr2:108789502|108789718 hsa-miR-548p 0 0 1
chr2:108789502|108789718 hsa-miR-548o 0 0 1
chr2:108789502|108789718 hsa-miR-1283 0 0 1
chr2:108789502|108789718 hsa-miR-508-5p 0 0 1
chr2:108789502|108789718 hsa-miR-330-5p 1 0 1
chr2:108789502|108789718 hsa-miR-548a-3p 0 0 1
chr2:108789502|108789718 hsa-miR-103 0 0 1
chr2:108789502|108789718 hsa-miR-16 0 0 1
chr2:108789502|108789718 hsa-miR-548f 0 0 1
chr2:108789502|108789718 hsa-miR-92a 0 0 1
chr2:108789502|108789718 hsa-miR-1299 1 0 0
chr2:108789502|108789718 hsa-miR-3147 1 0 0
chr2:108789502|108789718 hsa-miR-3650 1 1 0
chr2:108789502|108789718 hsa-miR-6134 0 1 0
chr2:108789502|108789718 hsa-miR-7703 0 1 0
chr2:108789502|108789718 hsa-miR-12114 0 1 0
chr2:108789502|108789718 hsa-miR-138-5p 1 0 0
chr2:108789502|108789718 hsa-miR-134-5p 1 0 0
chr2:108789502|108789718 hsa-miR-1247-3p 0 1 0
chr2:108789502|108789718 hsa-miR-6720-5p 0 1 0
chr2:108789502|108789718 hsa-miR-6799-5p 1 0 0
chr2:108789502|108789718 hsa-miR-7851-3p 1 1 0
chr2:108789502|108789718 hsa-miR-6089 1 0 0
chr2:108789502|108789718 hsa-miR-3192-5p 1 1 0
chr2:108789502|108789718 hsa-miR-6880-5p 0 1 0
chr2:108789502|108789718 hsa-miR-30b-3p 0 1 0
chr2:108789502|108789718 hsa-miR-6740-5p 1 0 0
chr2:108789502|108789718 hsa-miR-103a-3p 0 1 0
chr2:108789502|108789718 hsa-miR-6802-5p 1 0 0
chr2:108789502|108789718 hsa-miR-4774-5p 0 1 0
chr2:108789502|108789718 hsa-miR-92a-3p 0 1 0
chr2:108789502|108789718 hsa-miR-455-5p 0 1 0
chr2:108789502|108789718 hsa-miR-1273h-5p 1 1 0
chr2:108789502|108789718 hsa-miR-6769b-5p 1 0 0
chr2:108789502|108789718 hsa-miR-6812-5p 1 0 0
chr2:108789502|108789718 hsa-miR-6726-5p 1 0 0
chr2:108789502|108789718 hsa-miR-6803-5p 1 0 0
chr2:108789502|108789718 hsa-miR-6819-5p 1 0 0
chr2:108789502|108789718 hsa-miR-7107-5p 1 1 0
chr2:108789502|108789718 hsa-miR-4701-3p 1 1 0
chr2:108789502|108789718 hsa-miR-939-5p 1 0 0
chr2:108789502|108789718 hsa-miR-377-5p 0 1 0
chr2:108789502|108789718 hsa-miR-6736-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:108789502|108789718
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MYGSFFCSSFFLSSGQFCSSPRLECNGTILAHCNLHLPGSSDS
Nucleotide Sequence CTGTATGGCAGTTTTTTTTGTAGTTCGTTTTTTCTTTCTTCAGGACAGTTTTGCTCATCACCCAGGCTGGAGTGCAATGGCACAATCTTAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCT
CircID chr2:108789502|108789718
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MLLPNKTCMAVFFVVRFFFLQDSFAHHPGWSAMAQS
Nucleotide Sequence ATGCTGCTGCCTAACAAAACCTGTATGGCAGTTTTTTTTGTAGTTCGTTTTTTCTTTCTTCAGGACAGTTTTGCTCATCACCCAGGCTGGAGTGCAATGGCACAATCTTAG
CircID chr2:108789502|108789718
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MHTIPDTPEIVKCCCLTKPVWQFFL
Nucleotide Sequence ATGCATACAATACCAGACACACCAGAGATAGTAAAATGCTGCTGCCTAACAAAACCTGTATGGCAGTTTTTTTTGTAG
CircID chr2:108789502|108789718
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MNPGGGGCSELRLCHCTPAWVMSKTVLKKEKTNYKKNCHTGFVRQQHFTISGVSGIVCIVFR
Nucleotide Sequence TTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTAAGATTGTGCCATTGCACTCCAGCCTGGGTGATGAGCAAAACTGTCCTGAAGAAAGAAAAAACGAACTACAAAAAAAACTGCCATACAGGTTTTGTTAGGCAGCAGCATTTTACTATCTCTGGTGTGTCTGGTATTGTATGCATTGTATTTAGGTGA
CircID chr2:108789502|108789718
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MHSSLGDEQNCPEERKNELQKKLPYRFC
Nucleotide Sequence TTGCACTCCAGCCTGGGTGATGAGCAAAACTGTCCTGAAGAAAGAAAAAACGAACTACAAAAAAAACTGCCATACAGGTTTTGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab