CircRNA Information

General Information
circRNA Basic Information
CircID chr2:110161603|110163135
Strand -
CircType exon
Host Gene ENSG00000144061.12;
Algorism find_circ;CIRI2;DCC;
Sequence CAGATAAACACTGTTGATGTGTTAACTACGATGGGAGCTATTCCTGCAGGGTTCAGGCCTTCCACGCTCTCACAGCTTCTGGAGGAAGGTCTCGCGGTAAATTCTGCCTTCCCAGAGATGCCTTCCTTGAGTAATGGAATCAATTTCGAGCAAATTACTTCTTACAACCAGAGCTCATGCCTTCACAACTGGCCTTCAGAGATCTGATGTGGGATGCTACAGAAGGCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:110161603|110163135 hsa-miR-221-5p 0 0 1
chr2:110161603|110163135 hsa-miR-221-3p 0 0 1
chr2:110161603|110163135 hsa-miR-222-5p 0 0 1
chr2:110161603|110163135 hsa-miR-222-3p 0 0 1
chr2:110161603|110163135 hsa-miR-141-5p 0 0 1
chr2:110161603|110163135 hsa-miR-141-3p 0 0 1
chr2:110161603|110163135 hsa-miR-200a-5p 0 0 1
chr2:110161603|110163135 hsa-miR-200a-3p 0 0 1
chr2:110161603|110163135 hsa-miR-193b-5p 0 0 1
chr2:110161603|110163135 hsa-miR-193b-3p 0 0 1
chr2:110161603|110163135 hsa-miR-506-5p 0 0 1
chr2:110161603|110163135 hsa-miR-506-3p 0 0 1
chr2:110161603|110163135 hsa-miR-577 0 0 1
chr2:110161603|110163135 hsa-miR-600 0 1 1
chr2:110161603|110163135 hsa-miR-606 0 0 1
chr2:110161603|110163135 hsa-miR-765 0 0 1
chr2:110161603|110163135 hsa-miR-920 0 1 1
chr2:110161603|110163135 hsa-miR-1205 0 1 1
chr2:110161603|110163135 hsa-miR-1208 0 0 1
chr2:110161603|110163135 hsa-miR-1299 0 0 1
chr2:110161603|110163135 hsa-miR-1267 0 0 1
chr2:110161603|110163135 hsa-miR-513b-5p 0 0 1
chr2:110161603|110163135 hsa-miR-513b-3p 0 0 1
chr2:110161603|110163135 hsa-miR-299-3p 0 1 1
chr2:110161603|110163135 hsa-miR-532-5p 0 0 1
chr2:110161603|110163135 hsa-miR-342-3p 0 0 1
chr2:110161603|110163135 hsa-miR-193a-3p 0 1 1
chr2:110161603|110163135 hsa-miR-124 0 0 1
chr2:110161603|110163135 hsa-miR-516b 0 0 1
chr2:110161603|110163135 hsa-miR-637 1 0 0
chr2:110161603|110163135 hsa-miR-3142 0 1 0
chr2:110161603|110163135 hsa-miR-4489 0 1 0
chr2:110161603|110163135 hsa-miR-4654 0 1 0
chr2:110161603|110163135 hsa-miR-6090 1 0 0
chr2:110161603|110163135 hsa-miR-6728-5p 0 1 0
chr2:110161603|110163135 hsa-miR-6871-5p 1 0 0
chr2:110161603|110163135 hsa-miR-1343-3p 1 0 0
chr2:110161603|110163135 hsa-miR-744-5p 1 0 0
chr2:110161603|110163135 hsa-miR-3614-3p 0 1 0
chr2:110161603|110163135 hsa-miR-937-3p 0 1 0
chr2:110161603|110163135 hsa-miR-3670 0 1 0
chr2:110161603|110163135 hsa-miR-431-5p 1 0 0
chr2:110161603|110163135 hsa-miR-1233-5p 1 0 0
chr2:110161603|110163135 hsa-miR-6778-5p 1 0 0
chr2:110161603|110163135 hsa-miR-6726-5p 1 1 0
chr2:110161603|110163135 hsa-miR-6722-3p 1 0 0
chr2:110161603|110163135 hsa-miR-6780a-5p 1 0 0
chr2:110161603|110163135 hsa-miR-4728-5p 1 0 0
chr2:110161603|110163135 hsa-miR-1909-3p 1 0 0
chr2:110161603|110163135 hsa-miR-4725-3p 0 1 0
chr2:110161603|110163135 hsa-miR-6848-5p 1 0 0
chr2:110161603|110163135 hsa-miR-939-5p 1 0 0
chr2:110161603|110163135 hsa-miR-4769-5p 1 1 0
chr2:110161603|110163135 hsa-miR-6500-5p 0 1 0
chr2:110161603|110163135 hsa-miR-1245b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:110161603|110163135
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MGAIPAGFRPSTLSQLLEEGNQFRANYFLQPELMPSQLAFRDLMWDATEGT
Nucleotide Sequence ATGGGAGCTATTCCTGCAGGGTTCAGGCCTTCCACGCTCTCACAGCTTCTGGAGGAAGGGAATCAATTTCGAGCAAATTACTTCTTACAACCAGAGCTCATGCCTTCACAACTGGCCTTCAGAGATCTGATGTGGGATGCTACAGAAGGCACT
CircID chr2:110161603|110163135
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MQGSGLPRSHSFWRKGINFEQITSYNQSSCLHNWPSEI
Nucleotide Sequence CTGCAGGGTTCAGGCCTTCCACGCTCTCACAGCTTCTGGAGGAAGGGAATCAATTTCGAGCAAATTACTTCTTACAACCAGAGCTCATGCCTTCACAACTGGCCTTCAGAGATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:110161603|110163135 DGCR8 1 0 0
chr2:110161603|110163135 U2AF2 5 0 0
chr2:110161603|110163135 ELAVL1 5 0 0
chr2:110161603|110163135 ELAVL3 1 0 0
chr2:110161603|110163135 NOP56 1 0 0
chr2:110161603|110163135 TARDBP 2 0 0
chr2:110161603|110163135 FBL 2 0 0
chr2:110161603|110163135 HNRNPA2B1 1 0 0
chr2:110161603|110163135 NOP58 0 1 0
chr2:110161603|110163135 ZNF184 0 1 0
chr2:110161603|110163135 IGF2BP2 0 0 1
chr2:110161603|110163135 EIF4A3 1 2 0
chr2:110161603|110163135 RBFOX2 4 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab