CircRNA Information

General Information
circRNA Basic Information
CircID chr2:110641034|110641328
Strand -
CircType exon
Host Gene ENSG00000169679.13;
Algorism CIRI2;
Sequence CTGGTAGTTCCATGGTTTGTTGCTGAGCATCTCAACACACTGAAAACCAGATGTTTCACACTTTGCTGTGAATATAGTTCCTTTTGGAAAAAGTTTCATATCTATACTCTGACCCAGGTCAATCAGTGCCAAGCCAGCAGATAAATCATCTTCATCATCCTGTTCCAAAAATCTATATTAAACACAAACAAAGCCAGGCTGCATGAGCACAAATGATGAAAGGCTGCTATGGAAATAGGAAGAGAAGAACCCTGTTAAAAGCATAACACTTGCCCGTTTCCAAGTATGAAATTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:110641034|110641328 hsa-miR-15a-5p 0 0 1
chr2:110641034|110641328 hsa-miR-15a-3p 0 0 1
chr2:110641034|110641328 hsa-miR-27a-5p 0 0 1
chr2:110641034|110641328 hsa-miR-27a-3p 0 0 1
chr2:110641034|110641328 hsa-miR-96-5p 0 0 1
chr2:110641034|110641328 hsa-miR-96-3p 0 0 1
chr2:110641034|110641328 hsa-miR-192-5p 0 0 1
chr2:110641034|110641328 hsa-miR-192-3p 0 0 1
chr2:110641034|110641328 hsa-miR-215-5p 0 0 1
chr2:110641034|110641328 hsa-miR-215-3p 0 0 1
chr2:110641034|110641328 hsa-miR-15b-5p 0 0 1
chr2:110641034|110641328 hsa-miR-15b-3p 0 0 1
chr2:110641034|110641328 hsa-miR-27b-5p 0 0 1
chr2:110641034|110641328 hsa-miR-27b-3p 0 0 1
chr2:110641034|110641328 hsa-miR-143-5p 0 0 1
chr2:110641034|110641328 hsa-miR-143-3p 0 0 1
chr2:110641034|110641328 hsa-miR-195-5p 0 0 1
chr2:110641034|110641328 hsa-miR-195-3p 0 0 1
chr2:110641034|110641328 hsa-miR-424-5p 0 0 1
chr2:110641034|110641328 hsa-miR-424-3p 0 0 1
chr2:110641034|110641328 hsa-miR-494-5p 0 0 1
chr2:110641034|110641328 hsa-miR-494-3p 0 0 1
chr2:110641034|110641328 hsa-miR-495-5p 0 0 1
chr2:110641034|110641328 hsa-miR-495-3p 0 0 1
chr2:110641034|110641328 hsa-miR-497-5p 0 0 1
chr2:110641034|110641328 hsa-miR-497-3p 0 0 1
chr2:110641034|110641328 hsa-miR-520g-5p 0 0 1
chr2:110641034|110641328 hsa-miR-520g-3p 0 0 1
chr2:110641034|110641328 hsa-miR-520h 0 0 1
chr2:110641034|110641328 hsa-miR-503-5p 0 0 1
chr2:110641034|110641328 hsa-miR-503-3p 0 0 1
chr2:110641034|110641328 hsa-miR-545-5p 0 0 1
chr2:110641034|110641328 hsa-miR-545-3p 0 0 1
chr2:110641034|110641328 hsa-miR-579-5p 0 0 1
chr2:110641034|110641328 hsa-miR-579-3p 0 0 1
chr2:110641034|110641328 hsa-miR-587 0 0 1
chr2:110641034|110641328 hsa-miR-595 0 0 1
chr2:110641034|110641328 hsa-miR-599 0 0 1
chr2:110641034|110641328 hsa-miR-631 0 1 1
chr2:110641034|110641328 hsa-miR-646 0 0 1
chr2:110641034|110641328 hsa-miR-1271-5p 0 0 1
chr2:110641034|110641328 hsa-miR-1271-3p 0 0 1
chr2:110641034|110641328 hsa-miR-890 0 1 1
chr2:110641034|110641328 hsa-miR-889-5p 0 0 1
chr2:110641034|110641328 hsa-miR-889-3p 0 0 1
chr2:110641034|110641328 hsa-miR-942-5p 0 0 1
chr2:110641034|110641328 hsa-miR-942-3p 0 0 1
chr2:110641034|110641328 hsa-miR-1236-5p 0 0 1
chr2:110641034|110641328 hsa-miR-1236-3p 0 0 1
chr2:110641034|110641328 hsa-miR-1272 0 0 1
chr2:110641034|110641328 hsa-miR-513a-5p 0 0 1
chr2:110641034|110641328 hsa-miR-337-3p 0 0 1
chr2:110641034|110641328 hsa-miR-485-3p 0 0 1
chr2:110641034|110641328 hsa-miR-16 0 0 1
chr2:110641034|110641328 hsa-miR-218 0 0 1
chr2:110641034|110641328 hsa-miR-1290 1 1 0
chr2:110641034|110641328 hsa-miR-1246 1 1 0
chr2:110641034|110641328 hsa-miR-2861 1 0 0
chr2:110641034|110641328 hsa-miR-3137 1 0 0
chr2:110641034|110641328 hsa-miR-4298 1 1 0
chr2:110641034|110641328 hsa-miR-4302 1 0 0
chr2:110641034|110641328 hsa-miR-3661 1 1 0
chr2:110641034|110641328 hsa-miR-4425 1 1 0
chr2:110641034|110641328 hsa-miR-4686 0 1 0
chr2:110641034|110641328 hsa-miR-4729 0 1 0
chr2:110641034|110641328 hsa-miR-6081 1 0 0
chr2:110641034|110641328 hsa-miR-29b-1-5p 0 1 0
chr2:110641034|110641328 hsa-miR-370-3p 1 0 0
chr2:110641034|110641328 hsa-miR-6894-5p 1 0 0
chr2:110641034|110641328 hsa-miR-3692-5p 0 1 0
chr2:110641034|110641328 hsa-miR-7851-3p 0 1 0
chr2:110641034|110641328 hsa-miR-6798-5p 1 0 0
chr2:110641034|110641328 hsa-miR-6810-5p 1 0 0
chr2:110641034|110641328 hsa-miR-6809-3p 0 1 0
chr2:110641034|110641328 hsa-miR-7156-3p 1 0 0
chr2:110641034|110641328 hsa-miR-4776-5p 1 0 0
chr2:110641034|110641328 hsa-miR-3120-3p 0 1 0
chr2:110641034|110641328 hsa-miR-6801-5p 0 1 0
chr2:110641034|110641328 hsa-miR-335-3p 0 1 0
chr2:110641034|110641328 hsa-miR-6847-3p 0 1 0
chr2:110641034|110641328 hsa-miR-7107-5p 1 0 0
chr2:110641034|110641328 hsa-miR-320a-5p 0 1 0
chr2:110641034|110641328 hsa-miR-891a-5p 0 1 0
chr2:110641034|110641328 hsa-miR-664b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:110641034|110641328
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence LVVPWFVAEHLNTLKTRCFTLCCEYSSFWKKFHIYTLTQVNQCQASR
Nucleotide Sequence CTGGTAGTTCCATGGTTTGTTGCTGAGCATCTCAACACACTGAAAACCAGATGTTTCACACTTTGCTGTGAATATAGTTCCTTTTGGAAAAAGTTTCATATCTATACTCTGACCCAGGTCAATCAGTGCCAAGCCAGCAGATAA
CircID chr2:110641034|110641328
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MEKVSYLYSDPGQSVPSQQINHLHHPVPKIYIKHKQSQAA
Nucleotide Sequence TTGGAAAAAGTTTCATATCTATACTCTGACCCAGGTCAATCAGTGCCAAGCCAGCAGATAAATCATCTTCATCATCCTGTTCCAAAAATCTATATTAAACACAAACAAAGCCAGGCTGCATGA
CircID chr2:110641034|110641328
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLLTGFFSSYFHSSLSSFVLMQPGFVCV
Nucleotide Sequence ATGCTTTTAACAGGGTTCTTCTCTTCCTATTTCCATAGCAGCCTTTCATCATTTGTGCTCATGCAGCCTGGCTTTGTTTGTGTTTAA
CircID chr2:110641034|110641328
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQ
Nucleotide Sequence TTGGAACAGGATGATGAAGATGATTTATCTGCTGGCTTGGCACTGATTGACCTGGGTCAGAGTATAGATATGAAACTTTTTCCAAAAGGAACTATATTCACAGCAAAGTGTGAAACATCTGGTTTTCAGTGTGTTGAGATGCTCAGCAACAAACCATGGAACTACCAG
CircID chr2:110641034|110641328
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MCSCSLALFVFNIDFWNRMMKMIYLLAWH
Nucleotide Sequence TTGTGCTCATGCAGCCTGGCTTTGTTTGTGTTTAATATAGATTTTTGGAACAGGATGATGAAGATGATTTATCTGCTGGCTTGGCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab