CircRNA Information

General Information
circRNA Basic Information
CircID chr2:119264346|119264554
Strand +
CircType exon
Host Gene ENSG00000115107.18;
Algorism CIRI2;
Sequence TGGAGGACAGACGTCCTGTGGCCCCGGCGGTGCTCTTCCCTCTTGTGCTTTGGGGCAGCAGCATTTTAGGTTTGTAGCTTTGGTGGAAAAGTTGCTCCCCACTGTTTTGAAGTGTAATGCCCCATGAGGAGGAAGTTGGAGCCAGTGTGGTTTTCTGGGTCCTCTGCCAGAGGACATTTGGAGTCCCCAATATTTTTCCTCAGGACTGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:119264346|119264554 hsa-miR-149-5p 0 0 1
chr2:119264346|119264554 hsa-miR-149-3p 0 0 1
chr2:119264346|119264554 hsa-miR-1323 0 0 1
chr2:119264346|119264554 hsa-miR-891b 0 0 1
chr2:119264346|119264554 hsa-miR-892b 0 1 1
chr2:119264346|119264554 hsa-miR-939-5p 0 0 1
chr2:119264346|119264554 hsa-miR-939-3p 0 0 1
chr2:119264346|119264554 hsa-miR-1200 0 0 1
chr2:119264346|119264554 hsa-miR-548o-3p 0 0 1
chr2:119264346|119264554 hsa-miR-548o 0 0 1
chr2:119264346|119264554 hsa-miR-491-5p 0 1 1
chr2:119264346|119264554 hsa-miR-486-3p 0 0 1
chr2:119264346|119264554 hsa-miR-1283 0 0 1
chr2:119264346|119264554 hsa-miR-330-3p 0 1 1
chr2:119264346|119264554 hsa-miR-324-3p 0 0 1
chr2:119264346|119264554 hsa-miR-455-3p 0 0 1
chr2:119264346|119264554 hsa-miR-1308 0 0 1
chr2:119264346|119264554 hsa-miR-711 0 1 0
chr2:119264346|119264554 hsa-miR-3915 0 1 0
chr2:119264346|119264554 hsa-miR-4689 0 1 0
chr2:119264346|119264554 hsa-miR-4739 1 1 0
chr2:119264346|119264554 hsa-miR-4751 0 1 0
chr2:119264346|119264554 hsa-miR-6077 0 1 0
chr2:119264346|119264554 hsa-miR-6081 1 0 0
chr2:119264346|119264554 hsa-miR-6133 1 0 0
chr2:119264346|119264554 hsa-miR-8089 0 1 0
chr2:119264346|119264554 hsa-miR-128-1-5p 0 1 0
chr2:119264346|119264554 hsa-miR-4700-3p 0 1 0
chr2:119264346|119264554 hsa-miR-6822-3p 0 1 0
chr2:119264346|119264554 hsa-miR-3663-3p 1 1 0
chr2:119264346|119264554 hsa-miR-6798-5p 1 0 0
chr2:119264346|119264554 hsa-miR-2467-3p 0 1 0
chr2:119264346|119264554 hsa-miR-6786-5p 1 0 0
chr2:119264346|119264554 hsa-miR-6784-5p 0 1 0
chr2:119264346|119264554 hsa-miR-6757-3p 0 1 0
chr2:119264346|119264554 hsa-miR-3667-3p 0 1 0
chr2:119264346|119264554 hsa-miR-6824-5p 1 0 0
chr2:119264346|119264554 hsa-miR-194-3p 0 1 0
chr2:119264346|119264554 hsa-miR-6868-5p 0 1 0
chr2:119264346|119264554 hsa-miR-1911-5p 1 0 0
chr2:119264346|119264554 hsa-miR-5699-5p 0 1 0
chr2:119264346|119264554 hsa-miR-589-5p 0 1 0
chr2:119264346|119264554 hsa-miR-497-3p 0 1 0
chr2:119264346|119264554 hsa-miR-6775-5p 1 0 0
chr2:119264346|119264554 hsa-miR-1343-5p 1 0 0
chr2:119264346|119264554 hsa-miR-1249-5p 1 0 0
chr2:119264346|119264554 hsa-miR-6763-5p 0 1 0
chr2:119264346|119264554 hsa-miR-6797-5p 1 0 0
chr2:119264346|119264554 hsa-miR-4725-3p 1 0 0
chr2:119264346|119264554 hsa-miR-6735-5p 1 0 0
chr2:119264346|119264554 hsa-miR-6858-5p 1 0 0
chr2:119264346|119264554 hsa-miR-6885-5p 1 1 0
chr2:119264346|119264554 hsa-miR-6511a-5p 1 0 0
chr2:119264346|119264554 hsa-miR-6762-5p 0 1 0
chr2:119264346|119264554 hsa-miR-1912-3p 0 1 0
chr2:119264346|119264554 hsa-miR-367-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:119264346|119264554
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MRRKLEPVWFSGSSARGHLESPIFFLRT
Nucleotide Sequence ATGAGGAGGAAGTTGGAGCCAGTGTGGTTTTCTGGGTCCTCTGCCAGAGGACATTTGGAGTCCCCAATATTTTTCCTCAGGACT
CircID chr2:119264346|119264554
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGQQHFRFVALVEKLLPTVLKCNAP
Nucleotide Sequence TTGGGGCAGCAGCATTTTAGGTTTGTAGCTTTGGTGGAAAAGTTGCTCCCCACTGTTTTGAAGTGTAATGCCCCATGA
CircID chr2:119264346|119264554
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MPHEEEVGASVVFWVLCQRTFGVPNIFPQD
Nucleotide Sequence ATGCCCCATGAGGAGGAAGTTGGAGCCAGTGTGGTTTTCTGGGTCCTCTGCCAGAGGACATTTGGAGTCCCCAATATTTTTCCTCAGGACTGA
CircID chr2:119264346|119264554
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MRKNIGDSKCPLAEDPENHTGSNFLLMGHYTSKQWGATFPPKLQT
Nucleotide Sequence CTGAGGAAAAATATTGGGGACTCCAAATGTCCTCTGGCAGAGGACCCAGAAAACCACACTGGCTCCAACTTCCTCCTCATGGGGCATTACACTTCAAAACAGTGGGGAGCAACTTTTCCACCAAAGCTACAAACCTAA
CircID chr2:119264346|119264554
ORF Type ORF5
Protein Length 63
Nucleotide Length 189
Protein Sequence MGTPNVLWQRTQKTTLAPTSSSWGITLQNSGEQLFHQSYKPKMLLPQSTRGKSTAGATGRLSS
Nucleotide Sequence TTGGGGACTCCAAATGTCCTCTGGCAGAGGACCCAGAAAACCACACTGGCTCCAACTTCCTCCTCATGGGGCATTACACTTCAAAACAGTGGGGAGCAACTTTTCCACCAAAGCTACAAACCTAAAATGCTGCTGCCCCAAAGCACAAGAGGGAAGAGCACCGCCGGGGCCACAGGACGTCTGTCCTCC
CircID chr2:119264346|119264554
ORF Type ORF6
Protein Length 59
Nucleotide Length 177
Protein Sequence MSSGRGPRKPHWLQLPPHGALHFKTVGSNFSTKATNLKCCCPKAQEGRAPPGPQDVCPP
Nucleotide Sequence ATGTCCTCTGGCAGAGGACCCAGAAAACCACACTGGCTCCAACTTCCTCCTCATGGGGCATTACACTTCAAAACAGTGGGGAGCAACTTTTCCACCAAAGCTACAAACCTAAAATGCTGCTGCCCCAAAGCACAAGAGGGAAGAGCACCGCCGGGGCCACAGGACGTCTGTCCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab