CircRNA Information

General Information
circRNA Basic Information
CircID chr2:121216743|121216913
Strand -
CircType exon
Host Gene ENSG00000115112.7;
Algorism CIRI2;
Sequence CTCCCCAGGACCTCTCACACCCACCTGACCCATCCAAGGGCCACACCACCCCGACAGATACTCCCACCACCTTTAGAAAAGAGTCACCCAATCTGGAGAAAGGTGTGGAGGTTACATCTTTAGAAAGAAATCATTTTAAATACATGAACATTAGAGAACACAGTAACCGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:121216743|121216913 hsa-miR-328-5p 0 0 1
chr2:121216743|121216913 hsa-miR-328-3p 0 0 1
chr2:121216743|121216913 hsa-miR-608 1 1 1
chr2:121216743|121216913 hsa-miR-609 0 0 1
chr2:121216743|121216913 hsa-miR-766-5p 0 0 1
chr2:121216743|121216913 hsa-miR-766-3p 0 0 1
chr2:121216743|121216913 hsa-miR-892a 0 0 1
chr2:121216743|121216913 hsa-miR-541-5p 0 0 1
chr2:121216743|121216913 hsa-miR-541-3p 0 0 1
chr2:121216743|121216913 hsa-miR-939-5p 0 0 1
chr2:121216743|121216913 hsa-miR-939-3p 0 0 1
chr2:121216743|121216913 hsa-miR-1228-5p 0 0 1
chr2:121216743|121216913 hsa-miR-1228-3p 0 0 1
chr2:121216743|121216913 hsa-miR-663b 0 0 1
chr2:121216743|121216913 hsa-miR-1206 0 0 1
chr2:121216743|121216913 hsa-miR-1291 0 0 1
chr2:121216743|121216913 hsa-miR-1293 1 1 1
chr2:121216743|121216913 hsa-miR-1262 1 1 1
chr2:121216743|121216913 hsa-miR-548m 0 0 1
chr2:121216743|121216913 hsa-miR-125a-3p 1 0 1
chr2:121216743|121216913 hsa-miR-654-5p 0 0 1
chr2:121216743|121216913 hsa-miR-576-5p 0 0 1
chr2:121216743|121216913 hsa-miR-409-3p 0 0 1
chr2:121216743|121216913 hsa-miR-515-5p 0 0 1
chr2:121216743|121216913 hsa-miR-644 0 0 1
chr2:121216743|121216913 hsa-miR-4298 1 0 0
chr2:121216743|121216913 hsa-miR-4259 1 0 0
chr2:121216743|121216913 hsa-miR-4273 1 1 0
chr2:121216743|121216913 hsa-miR-3911 1 0 0
chr2:121216743|121216913 hsa-miR-4447 1 0 0
chr2:121216743|121216913 hsa-miR-4466 1 0 0
chr2:121216743|121216913 hsa-miR-3689c 1 0 0
chr2:121216743|121216913 hsa-miR-2392 1 0 0
chr2:121216743|121216913 hsa-miR-4510 1 0 0
chr2:121216743|121216913 hsa-miR-4651 1 1 0
chr2:121216743|121216913 hsa-miR-4654 1 0 0
chr2:121216743|121216913 hsa-miR-4658 1 0 0
chr2:121216743|121216913 hsa-miR-4744 0 1 0
chr2:121216743|121216913 hsa-miR-6127 1 0 0
chr2:121216743|121216913 hsa-miR-6129 1 0 0
chr2:121216743|121216913 hsa-miR-12114 1 0 0
chr2:121216743|121216913 hsa-miR-92a-2-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6747-5p 1 0 0
chr2:121216743|121216913 hsa-miR-125b-1-3p 1 0 0
chr2:121216743|121216913 hsa-miR-6825-5p 1 0 0
chr2:121216743|121216913 hsa-miR-4687-3p 1 0 0
chr2:121216743|121216913 hsa-miR-6867-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6730-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6741-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6727-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6759-5p 1 0 0
chr2:121216743|121216913 hsa-miR-432-5p 1 0 0
chr2:121216743|121216913 hsa-miR-7108-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6871-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6748-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6772-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6793-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6782-5p 1 0 0
chr2:121216743|121216913 hsa-miR-5008-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6835-5p 1 0 0
chr2:121216743|121216913 hsa-miR-1229-5p 1 0 0
chr2:121216743|121216913 hsa-miR-4640-5p 1 0 0
chr2:121216743|121216913 hsa-miR-937-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6800-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6802-5p 1 0 0
chr2:121216743|121216913 hsa-miR-574-5p 1 0 0
chr2:121216743|121216913 hsa-miR-5003-3p 1 1 0
chr2:121216743|121216913 hsa-miR-1233-5p 1 1 0
chr2:121216743|121216913 hsa-miR-3689b-3p 1 0 0
chr2:121216743|121216913 hsa-miR-6769b-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6778-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6787-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6812-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6816-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6865-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6737-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6752-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6756-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6769a-5p 1 1 0
chr2:121216743|121216913 hsa-miR-6803-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6815-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6819-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6842-5p 1 0 0
chr2:121216743|121216913 hsa-miR-7110-5p 1 0 0
chr2:121216743|121216913 hsa-miR-10401-5p 0 1 0
chr2:121216743|121216913 hsa-miR-1249-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6751-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6779-5p 1 0 0
chr2:121216743|121216913 hsa-miR-3689a-3p 1 0 0
chr2:121216743|121216913 hsa-miR-4701-3p 1 0 0
chr2:121216743|121216913 hsa-miR-6883-5p 1 0 0
chr2:121216743|121216913 hsa-miR-4758-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6736-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6766-5p 1 0 0
chr2:121216743|121216913 hsa-miR-6790-5p 1 0 0
chr2:121216743|121216913 hsa-miR-585-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr2:121216743|121216913
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MTHPRATPPRQILPPPLEKSHPIWRKVWRLHL
Nucleotide Sequence CTGACCCATCCAAGGGCCACACCACCCCGACAGATACTCCCACCACCTTTAGAAAAGAGTCACCCAATCTGGAGAAAGGTGTGGAGGTTACATCTTTAG
CircID chr2:121216743|121216913
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MEKGVEVTSLERNHFKYMNIREHSNR
Nucleotide Sequence CTGGAGAAAGGTGTGGAGGTTACATCTTTAGAAAGAAATCATTTTAAATACATGAACATTAGAGAACACAGTAACCGT
CircID chr2:121216743|121216913
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MGDSFLKVVGVSVGVVWPLDGSGGCERSWG
Nucleotide Sequence TTGGGTGACTCTTTTCTAAAGGTGGTGGGAGTATCTGTCGGGGTGGTGTGGCCCTTGGATGGGTCAGGTGGGTGTGAGAGGTCCTGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab