CircRNA Information

General Information
circRNA Basic Information
CircID chr2:127706099|127706332
Strand -
CircType exon
Host Gene ENSG00000136709.10;
Algorism CIRI2;
Sequence ATGGGAGTTGGGGCAATGAGGGTGGACAGGACAGGGCCAGCCAGGCTGGTAGCTGGCAGCAGTCTCTTCATCTTGAAGACCTCATTGAGGGTTCCTGGGATTCAGGTGCCCAGAAAAGAGTTCAGGGCTACAATGGTGCAGGCTTCCTTTTGTTTCTCTTGGTGAGTCCACAAGAAGTTCTTACATACTGTCCAGAGAGGCCTCAGGGTACTCAGTTCCAGCTTCTACCGACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:127706099|127706332 hsa-miR-10a-5p 0 0 1
chr2:127706099|127706332 hsa-miR-10a-3p 0 0 1
chr2:127706099|127706332 hsa-miR-10b-5p 0 0 1
chr2:127706099|127706332 hsa-miR-10b-3p 0 0 1
chr2:127706099|127706332 hsa-miR-144-5p 0 0 1
chr2:127706099|127706332 hsa-miR-144-3p 0 0 1
chr2:127706099|127706332 hsa-miR-380-5p 0 0 1
chr2:127706099|127706332 hsa-miR-380-3p 0 0 1
chr2:127706099|127706332 hsa-miR-328-5p 0 0 1
chr2:127706099|127706332 hsa-miR-328-3p 0 0 1
chr2:127706099|127706332 hsa-miR-326 0 0 1
chr2:127706099|127706332 hsa-miR-422a 0 0 1
chr2:127706099|127706332 hsa-miR-578 0 1 1
chr2:127706099|127706332 hsa-miR-581 0 0 1
chr2:127706099|127706332 hsa-miR-596 1 0 1
chr2:127706099|127706332 hsa-miR-612 0 1 1
chr2:127706099|127706332 hsa-miR-634 0 0 1
chr2:127706099|127706332 hsa-miR-873-5p 0 0 1
chr2:127706099|127706332 hsa-miR-873-3p 0 0 1
chr2:127706099|127706332 hsa-miR-1202 0 1 1
chr2:127706099|127706332 hsa-miR-1291 0 1 1
chr2:127706099|127706332 hsa-miR-671-5p 0 0 1
chr2:127706099|127706332 hsa-miR-767-5p 0 1 1
chr2:127706099|127706332 hsa-miR-146b-3p 0 0 1
chr2:127706099|127706332 hsa-miR-339-5p 0 1 1
chr2:127706099|127706332 hsa-miR-125a-5p 0 1 1
chr2:127706099|127706332 hsa-miR-330-5p 0 1 1
chr2:127706099|127706332 hsa-miR-548b-3p 0 0 1
chr2:127706099|127706332 hsa-miR-886-5p 0 0 1
chr2:127706099|127706332 hsa-miR-125b 0 0 1
chr2:127706099|127706332 hsa-miR-378 0 0 1
chr2:127706099|127706332 hsa-miR-1285 0 0 1
chr2:127706099|127706332 hsa-miR-129-3p 0 0 1
chr2:127706099|127706332 hsa-miR-1264 0 1 0
chr2:127706099|127706332 hsa-miR-3137 1 0 0
chr2:127706099|127706332 hsa-miR-3138 1 0 0
chr2:127706099|127706332 hsa-miR-3142 0 1 0
chr2:127706099|127706332 hsa-miR-320e 0 1 0
chr2:127706099|127706332 hsa-miR-4312 1 1 0
chr2:127706099|127706332 hsa-miR-3135b 1 1 0
chr2:127706099|127706332 hsa-miR-4526 1 0 0
chr2:127706099|127706332 hsa-miR-5690 0 1 0
chr2:127706099|127706332 hsa-miR-6079 0 1 0
chr2:127706099|127706332 hsa-miR-7976 0 1 0
chr2:127706099|127706332 hsa-miR-12113 0 1 0
chr2:127706099|127706332 hsa-miR-143-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6840-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6089 1 0 0
chr2:127706099|127706332 hsa-miR-3064-5p 0 1 0
chr2:127706099|127706332 hsa-miR-6842-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6849-3p 1 1 0
chr2:127706099|127706332 hsa-miR-3194-5p 1 0 0
chr2:127706099|127706332 hsa-miR-5008-5p 1 0 0
chr2:127706099|127706332 hsa-miR-6858-3p 1 0 0
chr2:127706099|127706332 hsa-miR-6852-5p 0 1 0
chr2:127706099|127706332 hsa-miR-3944-3p 1 0 0
chr2:127706099|127706332 hsa-miR-4786-3p 1 0 0
chr2:127706099|127706332 hsa-miR-4650-3p 1 0 0
chr2:127706099|127706332 hsa-miR-5196-3p 1 0 0
chr2:127706099|127706332 hsa-miR-4740-5p 1 0 0
chr2:127706099|127706332 hsa-miR-6866-5p 1 1 0
chr2:127706099|127706332 hsa-miR-6804-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6865-3p 0 1 0
chr2:127706099|127706332 hsa-miR-4649-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6777-3p 0 1 0
chr2:127706099|127706332 hsa-miR-518c-5p 0 1 0
chr2:127706099|127706332 hsa-miR-6748-3p 0 1 0
chr2:127706099|127706332 hsa-miR-1911-5p 0 1 0
chr2:127706099|127706332 hsa-miR-6769a-5p 1 0 0
chr2:127706099|127706332 hsa-miR-3187-5p 0 1 0
chr2:127706099|127706332 hsa-miR-6791-5p 1 0 0
chr2:127706099|127706332 hsa-miR-4722-3p 0 1 0
chr2:127706099|127706332 hsa-miR-4757-5p 0 1 0
chr2:127706099|127706332 hsa-miR-6775-3p 1 1 0
chr2:127706099|127706332 hsa-miR-3622a-3p 0 1 0
chr2:127706099|127706332 hsa-miR-4723-3p 0 1 0
chr2:127706099|127706332 hsa-miR-3085-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6744-3p 0 1 0
chr2:127706099|127706332 hsa-miR-6504-5p 0 1 0
chr2:127706099|127706332 hsa-miR-3622b-3p 0 1 0
chr2:127706099|127706332 hsa-miR-3914 0 1 0
chr2:127706099|127706332 hsa-miR-5699-3p 0 1 0
chr2:127706099|127706332 hsa-miR-3922-3p 0 1 0
chr2:127706099|127706332 hsa-miR-520e-5p 0 1 0
chr2:127706099|127706332 hsa-miR-3140-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:127706099|127706332
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MGVGAMRVDRTGPARLVAGSSLFILKTSLRVPGIQVPRKEFRATMVQASFCFSW
Nucleotide Sequence ATGGGAGTTGGGGCAATGAGGGTGGACAGGACAGGGCCAGCCAGGCTGGTAGCTGGCAGCAGTCTCTTCATCTTGAAGACCTCATTGAGGGTTCCTGGGATTCAGGTGCCCAGAAAAGAGTTCAGGGCTACAATGGTGCAGGCTTCCTTTTGTTTCTCTTGGTGA
CircID chr2:127706099|127706332
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MGFRCPEKSSGLQWCRLPFVSLGESTRSSYILSREASGYSVPASTD
Nucleotide Sequence CTGGGATTCAGGTGCCCAGAAAAGAGTTCAGGGCTACAATGGTGCAGGCTTCCTTTTGTTTCTCTTGGTGAGTCCACAAGAAGTTCTTACATACTGTCCAGAGAGGCCTCAGGGTACTCAGTTCCAGCTTCTACCGAC
CircID chr2:127706099|127706332
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MFLLVSPQEVLTYCPERPQGTQFQLLPT
Nucleotide Sequence TTGTTTCTCTTGGTGAGTCCACAAGAAGTTCTTACATACTGTCCAGAGAGGCCTCAGGGTACTCAGTTCCAGCTTCTACCGACC
CircID chr2:127706099|127706332
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MELSTLRPLWTVCKNFLWTHQEKQKEACTIVALNSFLGT
Nucleotide Sequence CTGGAACTGAGTACCCTGAGGCCTCTCTGGACAGTATGTAAGAACTTCTTGTGGACTCACCAAGAGAAACAAAAGGAAGCCTGCACCATTGTAGCCCTGAACTCTTTTCTGGGCACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab