CircRNA Information

General Information
circRNA Basic Information
CircID chr2:127713899|127717172
Strand -
CircType exon
Host Gene ENSG00000136709.10;
Algorism CIRI2;
Sequence CCCTGCAGTCCTGGCCACCCCGGAAAGGCCCCCTCTCGGGCCCATGCTCAGGCCCGCCGCTCTGCTCATGCCGCCTCTCTGACATCGGGCCCATGTGATGGTTTGGAGGGCCGCGGGAGTCACCTTTGTTGGGGCCAGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:127713899|127717172 hsa-miR-608 0 1 1
chr2:127713899|127717172 hsa-miR-631 0 1 1
chr2:127713899|127717172 hsa-miR-1180-5p 0 0 1
chr2:127713899|127717172 hsa-miR-1180-3p 0 0 1
chr2:127713899|127717172 hsa-miR-1205 0 0 1
chr2:127713899|127717172 hsa-miR-1288-5p 0 0 1
chr2:127713899|127717172 hsa-miR-1288-3p 0 0 1
chr2:127713899|127717172 hsa-miR-296-5p 0 0 1
chr2:127713899|127717172 hsa-miR-509-3-5p 0 0 1
chr2:127713899|127717172 hsa-miR-509-5p 0 0 1
chr2:127713899|127717172 hsa-miR-2861 1 1 0
chr2:127713899|127717172 hsa-miR-3196 1 0 0
chr2:127713899|127717172 hsa-miR-3197 1 0 0
chr2:127713899|127717172 hsa-miR-4304 0 1 0
chr2:127713899|127717172 hsa-miR-3661 0 1 0
chr2:127713899|127717172 hsa-miR-3937 1 0 0
chr2:127713899|127717172 hsa-miR-4467 1 0 0
chr2:127713899|127717172 hsa-miR-4497 1 0 0
chr2:127713899|127717172 hsa-miR-4507 1 0 0
chr2:127713899|127717172 hsa-miR-3960 1 0 0
chr2:127713899|127717172 hsa-miR-4656 1 0 0
chr2:127713899|127717172 hsa-miR-4674 1 0 0
chr2:127713899|127717172 hsa-miR-4689 1 0 0
chr2:127713899|127717172 hsa-miR-4739 1 1 0
chr2:127713899|127717172 hsa-miR-6134 1 0 0
chr2:127713899|127717172 hsa-miR-6860 1 0 0
chr2:127713899|127717172 hsa-miR-8072 0 1 0
chr2:127713899|127717172 hsa-miR-12128 1 1 0
chr2:127713899|127717172 hsa-miR-132-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6765-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6728-5p 1 0 0
chr2:127713899|127717172 hsa-miR-139-3p 1 0 0
chr2:127713899|127717172 hsa-miR-4695-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6820-5p 1 0 0
chr2:127713899|127717172 hsa-miR-874-5p 0 1 0
chr2:127713899|127717172 hsa-miR-6742-5p 1 0 0
chr2:127713899|127717172 hsa-miR-3180-3p 1 0 0
chr2:127713899|127717172 hsa-miR-6805-5p 1 1 0
chr2:127713899|127717172 hsa-miR-6782-5p 1 1 0
chr2:127713899|127717172 hsa-miR-6852-5p 1 0 0
chr2:127713899|127717172 hsa-miR-3944-3p 1 0 0
chr2:127713899|127717172 hsa-miR-4783-3p 1 0 0
chr2:127713899|127717172 hsa-miR-6784-5p 1 0 0
chr2:127713899|127717172 hsa-miR-4717-3p 1 1 0
chr2:127713899|127717172 hsa-miR-6749-5p 1 1 0
chr2:127713899|127717172 hsa-miR-4743-5p 1 0 0
chr2:127713899|127717172 hsa-miR-4787-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6789-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6781-5p 1 0 0
chr2:127713899|127717172 hsa-miR-3065-5p 0 1 0
chr2:127713899|127717172 hsa-miR-5699-5p 0 1 0
chr2:127713899|127717172 hsa-miR-4740-3p 0 1 0
chr2:127713899|127717172 hsa-miR-10400-5p 1 0 0
chr2:127713899|127717172 hsa-miR-1207-5p 1 0 0
chr2:127713899|127717172 hsa-miR-4763-3p 1 0 0
chr2:127713899|127717172 hsa-miR-6812-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6816-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6865-5p 1 0 0
chr2:127713899|127717172 hsa-miR-1343-5p 1 0 0
chr2:127713899|127717172 hsa-miR-5001-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6737-5p 1 1 0
chr2:127713899|127717172 hsa-miR-6743-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6752-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6754-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6803-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6815-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6819-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6842-5p 1 0 0
chr2:127713899|127717172 hsa-miR-3620-5p 1 0 0
chr2:127713899|127717172 hsa-miR-1237-5p 1 0 0
chr2:127713899|127717172 hsa-miR-328-5p 1 0 0
chr2:127713899|127717172 hsa-miR-4726-5p 1 0 0
chr2:127713899|127717172 hsa-miR-4745-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6794-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6846-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6848-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6885-5p 1 0 0
chr2:127713899|127717172 hsa-miR-3085-5p 1 0 0
chr2:127713899|127717172 hsa-miR-6758-5p 0 1 0
chr2:127713899|127717172 hsa-miR-6856-5p 1 1 0
chr2:127713899|127717172 hsa-miR-6773-5p 0 1 0
chr2:127713899|127717172 hsa-miR-6724-5p 1 1 0
chr2:127713899|127717172 hsa-miR-193b-3p 1 0 0
chr2:127713899|127717172 hsa-miR-10400-3p 1 0 0
chr2:127713899|127717172 hsa-miR-4691-5p 0 1 0
chr2:127713899|127717172 hsa-miR-3922-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:127713899|127717172
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LQSWPPRKGPLSGPCSGPPLCSCRLSDIGPM
Nucleotide Sequence CTGCAGTCCTGGCCACCCCGGAAAGGCCCCCTCTCGGGCCCATGCTCAGGCCCGCCGCTCTGCTCATGCCGCCTCTCTGACATCGGGCCCATGTGA
CircID chr2:127713899|127717172
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MAPTKVTPAALQTITWARCQRGGMSRAAGLSMGPRGGLSGVARTAG
Nucleotide Sequence CTGGCCCCAACAAAGGTGACTCCCGCGGCCCTCCAAACCATCACATGGGCCCGATGTCAGAGAGGCGGCATGAGCAGAGCGGCGGGCCTGAGCATGGGCCCGAGAGGGGGCCTTTCCGGGGTGGCCAGGACTGCAGGG
CircID chr2:127713899|127717172
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MGPMSERRHEQSGGPEHGPERGPFRGGQDCR
Nucleotide Sequence ATGGGCCCGATGTCAGAGAGGCGGCATGAGCAGAGCGGCGGGCCTGAGCATGGGCCCGAGAGGGGGCCTTTCCGGGGTGGCCAGGACTGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab