CircRNA Information

General Information
circRNA Basic Information
CircID chr2:130346598|130346736
Strand +
CircType exon
Host Gene ENSG00000136718.8;
Algorism CIRI2;
Sequence CCCCACACTGACTCCAGGCCCAAGCACGTCCCACAGCCATCAGGTCCCCACCCAAAGGGATCCCATGGGCTTTGCCCTGCAGACTTGGCCTGACCACTCAGAGGCAGGCGGGGCCATGACACAGACGGTTTATTCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:130346598|130346736 hsa-miR-204-5p 0 0 1
chr2:130346598|130346736 hsa-miR-204-3p 0 0 1
chr2:130346598|130346736 hsa-miR-211-5p 0 0 1
chr2:130346598|130346736 hsa-miR-211-3p 0 0 1
chr2:130346598|130346736 hsa-miR-492 0 0 1
chr2:130346598|130346736 hsa-miR-592 0 0 1
chr2:130346598|130346736 hsa-miR-597-5p 0 0 1
chr2:130346598|130346736 hsa-miR-597-3p 0 0 1
chr2:130346598|130346736 hsa-miR-635 0 0 1
chr2:130346598|130346736 hsa-miR-636 0 0 1
chr2:130346598|130346736 hsa-miR-638 1 0 1
chr2:130346598|130346736 hsa-miR-1205 0 0 1
chr2:130346598|130346736 hsa-miR-1293 0 0 1
chr2:130346598|130346736 hsa-miR-1262 0 0 1
chr2:130346598|130346736 hsa-miR-491-5p 0 0 1
chr2:130346598|130346736 hsa-miR-1184 0 0 1
chr2:130346598|130346736 hsa-miR-1289 0 0 1
chr2:130346598|130346736 hsa-miR-188-5p 0 0 1
chr2:130346598|130346736 hsa-miR-769-3p 1 0 1
chr2:130346598|130346736 hsa-miR-450b-3p 0 0 1
chr2:130346598|130346736 hsa-miR-1254 0 0 1
chr2:130346598|130346736 hsa-miR-760 1 0 0
chr2:130346598|130346736 hsa-miR-663b 1 0 0
chr2:130346598|130346736 hsa-miR-2861 1 0 0
chr2:130346598|130346736 hsa-miR-3649 0 1 0
chr2:130346598|130346736 hsa-miR-378g 1 0 0
chr2:130346598|130346736 hsa-miR-4427 0 1 0
chr2:130346598|130346736 hsa-miR-4440 1 0 0
chr2:130346598|130346736 hsa-miR-4507 1 0 0
chr2:130346598|130346736 hsa-miR-4641 0 1 0
chr2:130346598|130346736 hsa-miR-4648 0 1 0
chr2:130346598|130346736 hsa-miR-4651 1 0 0
chr2:130346598|130346736 hsa-miR-7974 0 1 0
chr2:130346598|130346736 hsa-miR-8075 1 0 0
chr2:130346598|130346736 hsa-miR-8089 1 0 0
chr2:130346598|130346736 hsa-miR-92a-2-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6747-3p 0 1 0
chr2:130346598|130346736 hsa-miR-1972 0 1 0
chr2:130346598|130346736 hsa-miR-4687-3p 1 0 0
chr2:130346598|130346736 hsa-miR-6799-5p 1 0 0
chr2:130346598|130346736 hsa-miR-8069 1 0 0
chr2:130346598|130346736 hsa-miR-6821-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6810-5p 1 0 0
chr2:130346598|130346736 hsa-miR-3691-3p 0 1 0
chr2:130346598|130346736 hsa-miR-6786-5p 1 0 0
chr2:130346598|130346736 hsa-miR-1229-5p 1 0 0
chr2:130346598|130346736 hsa-miR-1228-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6749-5p 1 0 0
chr2:130346598|130346736 hsa-miR-937-5p 0 1 0
chr2:130346598|130346736 hsa-miR-135b-3p 0 1 0
chr2:130346598|130346736 hsa-miR-3191-3p 1 0 0
chr2:130346598|130346736 hsa-miR-328-3p 0 1 0
chr2:130346598|130346736 hsa-miR-4485-5p 0 1 0
chr2:130346598|130346736 hsa-miR-6769b-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6775-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6737-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6756-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6819-5p 1 0 0
chr2:130346598|130346736 hsa-miR-10401-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6763-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6774-5p 0 1 0
chr2:130346598|130346736 hsa-miR-6779-5p 1 0 0
chr2:130346598|130346736 hsa-miR-4726-5p 1 0 0
chr2:130346598|130346736 hsa-miR-4745-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6735-5p 0 1 0
chr2:130346598|130346736 hsa-miR-6795-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6848-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6887-5p 1 0 0
chr2:130346598|130346736 hsa-miR-939-5p 1 0 0
chr2:130346598|130346736 hsa-miR-1238-5p 0 1 0
chr2:130346598|130346736 hsa-miR-4758-5p 1 0 0
chr2:130346598|130346736 hsa-miR-3940-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6736-5p 1 0 0
chr2:130346598|130346736 hsa-miR-3116 0 1 0
chr2:130346598|130346736 hsa-miR-6766-5p 0 1 0
chr2:130346598|130346736 hsa-miR-6724-5p 1 0 0
chr2:130346598|130346736 hsa-miR-6718-5p 0 1 0
chr2:130346598|130346736 hsa-miR-10392-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:130346598|130346736
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MTPGPSTSHSHQVPTQRDPMGFALQTWPDHSEAGGAMTQTVYSD
Nucleotide Sequence CTGACTCCAGGCCCAAGCACGTCCCACAGCCATCAGGTCCCCACCCAAAGGGATCCCATGGGCTTTGCCCTGCAGACTTGGCCTGACCACTCAGAGGCAGGCGGGGCCATGACACAGACGGTTTATTCAGAC
CircID chr2:130346598|130346736
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MQGKAHGIPLGGDLMAVGRAWAWSQCG
Nucleotide Sequence CTGCAGGGCAAAGCCCATGGGATCCCTTTGGGTGGGGACCTGATGGCTGTGGGACGTGCTTGGGCCTGGAGTCAGTGTGGG
CircID chr2:130346598|130346736
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MAPPASEWSGQVCRAKPMGSLWVGT
Nucleotide Sequence ATGGCCCCGCCTGCCTCTGAGTGGTCAGGCCAAGTCTGCAGGGCAAAGCCCATGGGATCCCTTTGGGTGGGGACCTGA
CircID chr2:130346598|130346736
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence LNKPSVSWPRLPLSGQAKSAGQSPWDPFGWGPDGCGTCLGLESVW
Nucleotide Sequence CTGAATAAACCGTCTGTGTCATGGCCCCGCCTGCCTCTGAGTGGTCAGGCCAAGTCTGCAGGGCAAAGCCCATGGGATCCCTTTGGGTGGGGACCTGATGGCTGTGGGACGTGCTTGGGCCTGGAGTCAGTGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab