CircRNA Information

General Information
circRNA Basic Information
CircID chr2:135724148|135724314
Strand -
CircType exon
Host Gene ENSG00000048991.15;
Algorism CIRI2;
Sequence CTACACCGTCTTAGCCACATTCCCCTCCATTTCAGCTGCACAGAATGCACTGAAGAAACAAATTAACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAAGAAGCACTATGACTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAACAGCCACCTTTGGACCCTTCGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:135724148|135724314 hsa-miR-208a-5p 0 0 1
chr2:135724148|135724314 hsa-miR-208a-3p 0 0 1
chr2:135724148|135724314 hsa-miR-148a-5p 0 0 1
chr2:135724148|135724314 hsa-miR-148a-3p 0 0 1
chr2:135724148|135724314 hsa-miR-152-5p 0 0 1
chr2:135724148|135724314 hsa-miR-152-3p 0 0 1
chr2:135724148|135724314 hsa-miR-146a-5p 0 0 1
chr2:135724148|135724314 hsa-miR-146a-3p 0 0 1
chr2:135724148|135724314 hsa-miR-206 0 0 1
chr2:135724148|135724314 hsa-miR-148b-5p 0 0 1
chr2:135724148|135724314 hsa-miR-148b-3p 0 0 1
chr2:135724148|135724314 hsa-miR-520f-5p 0 0 1
chr2:135724148|135724314 hsa-miR-520f-3p 0 0 1
chr2:135724148|135724314 hsa-miR-589-5p 0 0 1
chr2:135724148|135724314 hsa-miR-589-3p 0 0 1
chr2:135724148|135724314 hsa-miR-613 0 0 1
chr2:135724148|135724314 hsa-miR-1301-5p 0 0 1
chr2:135724148|135724314 hsa-miR-1301-3p 0 0 1
chr2:135724148|135724314 hsa-miR-874-5p 0 0 1
chr2:135724148|135724314 hsa-miR-874-3p 0 0 1
chr2:135724148|135724314 hsa-miR-208b-5p 0 0 1
chr2:135724148|135724314 hsa-miR-208b-3p 0 0 1
chr2:135724148|135724314 hsa-miR-938 0 0 1
chr2:135724148|135724314 hsa-miR-512-3p 0 0 1
chr2:135724148|135724314 hsa-miR-146b-5p 0 0 1
chr2:135724148|135724314 hsa-miR-1 0 0 1
chr2:135724148|135724314 hsa-miR-203 0 0 1
chr2:135724148|135724314 hsa-miR-4257 1 0 0
chr2:135724148|135724314 hsa-miR-4450 1 0 0
chr2:135724148|135724314 hsa-miR-4525 1 0 0
chr2:135724148|135724314 hsa-miR-5194 1 0 0
chr2:135724148|135724314 hsa-miR-92a-2-5p 1 0 0
chr2:135724148|135724314 hsa-miR-122-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6734-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6515-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6716-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6798-5p 1 0 0
chr2:135724148|135724314 hsa-miR-1908-5p 1 0 0
chr2:135724148|135724314 hsa-miR-149-3p 1 0 0
chr2:135724148|135724314 hsa-miR-423-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6803-5p 1 0 0
chr2:135724148|135724314 hsa-miR-1249-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6763-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6779-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6797-5p 1 0 0
chr2:135724148|135724314 hsa-miR-4728-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6780b-5p 1 0 0
chr2:135724148|135724314 hsa-miR-328-5p 1 0 0
chr2:135724148|135724314 hsa-miR-4745-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6777-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6794-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6795-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6846-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6848-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6887-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6889-5p 1 0 0
chr2:135724148|135724314 hsa-miR-3187-5p 1 0 0
chr2:135724148|135724314 hsa-miR-1914-3p 1 0 0
chr2:135724148|135724314 hsa-miR-6891-5p 1 0 0
chr2:135724148|135724314 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:135724148|135724314
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MKKQINSVNKFKLRTSKKHYDFHILERASSQ
Nucleotide Sequence CTGAAGAAACAAATTAACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAAGAAGCACTATGACTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAA
CircID chr2:135724148|135724314
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MLLRTCPFQNVKVIVLLACSQLKLVN
Nucleotide Sequence CTGTTACTGAGAACTTGCCCTTTCCAAAATGTGAAAGTCATAGTGCTTCTTGCTTGTTCTCAGCTTAAACTTGTTAACTGA
CircID chr2:135724148|135724314
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MLVLSLNLLTELICFFSAFCAAEMEGNVAKTV
Nucleotide Sequence TTGCTTGTTCTCAGCTTAAACTTGTTAACTGAGTTAATTTGTTTCTTCAGTGCATTCTGTGCAGCTGAAATGGAGGGGAATGTGGCTAAGACGGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab