CircRNA Information

General Information
circRNA Basic Information
CircID chr2:15946161|15946365
Strand -
CircType exon
Host Gene ENSG00000134323.10;
Algorism CIRI2;
Sequence ATTGTGTTGACATTAAGAATGTTGGTTTACTTTCAAATCGGTCCCCTGTCGAGTTCGGCTCTGGGTGGGCAGTAGGACCACCAGTGTGGGGTTCTGCTGGGACCTTGGAGAGCCTGCATCCCAGGATGCTGGGTGGCCCTGCAGCCTCCTCCACCTCACCTCCATGACAGCGCTAAACGTTGGTGACGGTTGGGAGCCTCTGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:15946161|15946365 hsa-miR-150-5p 0 0 1
chr2:15946161|15946365 hsa-miR-150-3p 0 0 1
chr2:15946161|15946365 hsa-miR-484 0 0 1
chr2:15946161|15946365 hsa-miR-488-5p 0 0 1
chr2:15946161|15946365 hsa-miR-488-3p 0 0 1
chr2:15946161|15946365 hsa-miR-505-5p 0 0 1
chr2:15946161|15946365 hsa-miR-505-3p 0 0 1
chr2:15946161|15946365 hsa-miR-559 0 0 1
chr2:15946161|15946365 hsa-miR-765 0 0 1
chr2:15946161|15946365 hsa-miR-543 0 0 1
chr2:15946161|15946365 hsa-miR-922 0 0 1
chr2:15946161|15946365 hsa-miR-1205 0 0 1
chr2:15946161|15946365 hsa-miR-548j-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548j-3p 0 0 1
chr2:15946161|15946365 hsa-miR-1294 0 0 1
chr2:15946161|15946365 hsa-miR-485-5p 0 0 1
chr2:15946161|15946365 hsa-miR-490-5p 0 0 1
chr2:15946161|15946365 hsa-miR-876-3p 0 0 1
chr2:15946161|15946365 hsa-miR-338-3p 0 1 1
chr2:15946161|15946365 hsa-miR-548b-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548d-5p 0 0 1
chr2:15946161|15946365 hsa-miR-515-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548c-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548a-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548i 0 0 1
chr2:15946161|15946365 hsa-miR-323-5p 0 0 1
chr2:15946161|15946365 hsa-miR-548h 0 0 1
chr2:15946161|15946365 hsa-miR-608 1 0 0
chr2:15946161|15946365 hsa-miR-3155a 0 1 0
chr2:15946161|15946365 hsa-miR-3155b 0 1 0
chr2:15946161|15946365 hsa-miR-4530 0 1 0
chr2:15946161|15946365 hsa-miR-4537 0 1 0
chr2:15946161|15946365 hsa-miR-4651 1 0 0
chr2:15946161|15946365 hsa-miR-4710 0 1 0
chr2:15946161|15946365 hsa-miR-4741 1 0 0
chr2:15946161|15946365 hsa-miR-5572 1 0 0
chr2:15946161|15946365 hsa-miR-6134 0 1 0
chr2:15946161|15946365 hsa-miR-12113 0 1 0
chr2:15946161|15946365 hsa-miR-12114 0 1 0
chr2:15946161|15946365 hsa-miR-500b-3p 0 1 0
chr2:15946161|15946365 hsa-miR-323a-5p 0 1 0
chr2:15946161|15946365 hsa-miR-6765-5p 1 0 0
chr2:15946161|15946365 hsa-miR-125a-3p 1 0 0
chr2:15946161|15946365 hsa-miR-6799-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6880-5p 1 1 0
chr2:15946161|15946365 hsa-miR-7847-3p 1 1 0
chr2:15946161|15946365 hsa-miR-4695-5p 0 1 0
chr2:15946161|15946365 hsa-miR-512-3p 1 1 0
chr2:15946161|15946365 hsa-miR-6742-5p 1 0 0
chr2:15946161|15946365 hsa-miR-2467-5p 0 1 0
chr2:15946161|15946365 hsa-miR-6782-5p 1 0 0
chr2:15946161|15946365 hsa-miR-1343-3p 0 1 0
chr2:15946161|15946365 hsa-miR-6786-5p 1 0 0
chr2:15946161|15946365 hsa-miR-4707-3p 1 1 0
chr2:15946161|15946365 hsa-miR-6757-3p 0 1 0
chr2:15946161|15946365 hsa-miR-4787-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6824-5p 1 0 0
chr2:15946161|15946365 hsa-miR-4746-5p 0 1 0
chr2:15946161|15946365 hsa-miR-1207-5p 1 0 0
chr2:15946161|15946365 hsa-miR-1233-5p 1 0 0
chr2:15946161|15946365 hsa-miR-4763-3p 1 0 0
chr2:15946161|15946365 hsa-miR-6812-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6737-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6752-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6803-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6819-5p 1 1 0
chr2:15946161|15946365 hsa-miR-6851-5p 1 0 0
chr2:15946161|15946365 hsa-miR-7110-5p 1 0 0
chr2:15946161|15946365 hsa-miR-11181-3p 0 1 0
chr2:15946161|15946365 hsa-miR-6722-3p 1 0 0
chr2:15946161|15946365 hsa-miR-6751-5p 1 1 0
chr2:15946161|15946365 hsa-miR-3620-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6836-5p 1 1 0
chr2:15946161|15946365 hsa-miR-6848-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6858-5p 1 0 0
chr2:15946161|15946365 hsa-miR-6762-5p 0 1 0
chr2:15946161|15946365 hsa-miR-769-3p 1 0 0
chr2:15946161|15946365 hsa-miR-3130-5p 0 1 0
chr2:15946161|15946365 hsa-miR-619-5p 0 1 0
chr2:15946161|15946365 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:15946161|15946365
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MLGPWRACIPGCWVALQPPPPHLHDSAKRW
Nucleotide Sequence CTGCTGGGACCTTGGAGAGCCTGCATCCCAGGATGCTGGGTGGCCCTGCAGCCTCCTCCACCTCACCTCCATGACAGCGCTAAACGTTGGTGA
CircID chr2:15946161|15946365
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MGCRLSKVPAEPHTGGPTAHPEPNSTGDRFESKPTFLMSTQ
Nucleotide Sequence CTGGGATGCAGGCTCTCCAAGGTCCCAGCAGAACCCCACACTGGTGGTCCTACTGCCCACCCAGAGCCGAACTCGACAGGGGACCGATTTGAAAGTAAACCAACATTCTTAATGTCAACACAA
CircID chr2:15946161|15946365
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MEVRWRRLQGHPASWDAGSPRSQQNPTLVVLLPTQSRTRQGTDLKVNQHS
Nucleotide Sequence ATGGAGGTGAGGTGGAGGAGGCTGCAGGGCCACCCAGCATCCTGGGATGCAGGCTCTCCAAGGTCCCAGCAGAACCCCACACTGGTGGTCCTACTGCCCACCCAGAGCCGAACTCGACAGGGGACCGATTTGAAAGTAAACCAACATTCTTAA
CircID chr2:15946161|15946365
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MQALQGPSRTPHWWSYCPPRAELDRGPI
Nucleotide Sequence ATGCAGGCTCTCCAAGGTCCCAGCAGAACCCCACACTGGTGGTCCTACTGCCCACCCAGAGCCGAACTCGACAGGGGACCGATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab