CircRNA Information

General Information
circRNA Basic Information
CircID chr2:160272523|160272782
Strand -
CircType exon
Host Gene ENSG00000153250.16;
Algorism CIRI2;
Sequence CCAGACGAGTATGGCACTTAGTTCAGACATTTCTAGCAGCAGATTTCCCCTCCCCTCTAACCGAGCTATCAAATTTCTGTCTTAACTAATGCAAAAATATCAAGTAGTGAGAGACCCAGGTTTATAACTGTACTAGGTACACAGAGGGTGCTGCGTTCAGTCTGGACTTTCACAAAGCAGTAATATTCCAGGGAGCATAGAACCAATAATACCACAACTTTAAAAAAATGAAACAAAAACAAAAACAAAAACACATTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:160272523|160272782 hsa-miR-33a-5p 0 0 1
chr2:160272523|160272782 hsa-miR-33a-3p 0 0 1
chr2:160272523|160272782 hsa-miR-198 -4 1 1
chr2:160272523|160272782 hsa-miR-208a-5p 0 0 1
chr2:160272523|160272782 hsa-miR-208a-3p 0 0 1
chr2:160272523|160272782 hsa-miR-302a-5p 0 0 1
chr2:160272523|160272782 hsa-miR-302a-3p 0 0 1
chr2:160272523|160272782 hsa-miR-302b-5p 0 0 1
chr2:160272523|160272782 hsa-miR-302b-3p 0 0 1
chr2:160272523|160272782 hsa-miR-302c-5p 0 0 1
chr2:160272523|160272782 hsa-miR-302c-3p 0 0 1
chr2:160272523|160272782 hsa-miR-302d-5p 0 0 1
chr2:160272523|160272782 hsa-miR-302d-3p 0 0 1
chr2:160272523|160272782 hsa-miR-372-5p 0 0 1
chr2:160272523|160272782 hsa-miR-372-3p 0 0 1
chr2:160272523|160272782 hsa-miR-373-5p 0 0 1
chr2:160272523|160272782 hsa-miR-373-3p 0 0 1
chr2:160272523|160272782 hsa-miR-382-5p 0 0 1
chr2:160272523|160272782 hsa-miR-382-3p 0 0 1
chr2:160272523|160272782 hsa-miR-340-5p 0 0 1
chr2:160272523|160272782 hsa-miR-340-3p 0 0 1
chr2:160272523|160272782 hsa-miR-520e-5p 0 0 1
chr2:160272523|160272782 hsa-miR-520e-3p 0 0 1
chr2:160272523|160272782 hsa-miR-520b-5p 0 0 1
chr2:160272523|160272782 hsa-miR-520b-3p 0 0 1
chr2:160272523|160272782 hsa-miR-507 -4 0 1
chr2:160272523|160272782 hsa-miR-557 -8 0 1
chr2:160272523|160272782 hsa-miR-561-5p 0 0 1
chr2:160272523|160272782 hsa-miR-561-3p 0 0 1
chr2:160272523|160272782 hsa-miR-579-5p 0 0 1
chr2:160272523|160272782 hsa-miR-579-3p 0 0 1
chr2:160272523|160272782 hsa-miR-33b-5p 0 0 1
chr2:160272523|160272782 hsa-miR-33b-3p 0 0 1
chr2:160272523|160272782 hsa-miR-641 -6 0 1
chr2:160272523|160272782 hsa-miR-659-5p 0 0 1
chr2:160272523|160272782 hsa-miR-659-3p 0 0 1
chr2:160272523|160272782 hsa-miR-758-5p 0 0 1
chr2:160272523|160272782 hsa-miR-758-3p 0 0 1
chr2:160272523|160272782 hsa-miR-877-5p 0 0 1
chr2:160272523|160272782 hsa-miR-877-3p 0 0 1
chr2:160272523|160272782 hsa-miR-208b-5p 0 0 1
chr2:160272523|160272782 hsa-miR-208b-3p 0 0 1
chr2:160272523|160272782 hsa-miR-302e 0 0 1
chr2:160272523|160272782 hsa-miR-129-5p -8 0 1
chr2:160272523|160272782 hsa-miR-423-3p -15 1 1
chr2:160272523|160272782 hsa-miR-193a-5p -12 0 1
chr2:160272523|160272782 hsa-miR-490-3p -9 0 1
chr2:160272523|160272782 hsa-miR-654-3p -5 0 1
chr2:160272523|160272782 hsa-miR-582-5p -5 0 1
chr2:160272523|160272782 hsa-miR-520d-3p 0 0 1
chr2:160272523|160272782 hsa-miR-519b-3p 0 0 1
chr2:160272523|160272782 hsa-miR-519c-3p 0 0 1
chr2:160272523|160272782 hsa-miR-520a-3p 0 0 1
chr2:160272523|160272782 hsa-miR-520c-3p 0 0 1
chr2:160272523|160272782 hsa-miR-450b-5p -3 0 1
chr2:160272523|160272782 hsa-miR-499-5p 0 0 1
chr2:160272523|160272782 hsa-miR-519a 0 0 1
chr2:160272523|160272782 hsa-miR-661 -21 1 0
chr2:160272523|160272782 hsa-miR-4308 -7 1 0
chr2:160272523|160272782 hsa-miR-378h -12 1 0
chr2:160272523|160272782 hsa-miR-378i -10 1 0
chr2:160272523|160272782 hsa-miR-4539 -10 1 0
chr2:160272523|160272782 hsa-miR-5680 -10 1 0
chr2:160272523|160272782 hsa-miR-6825-5p -20 1 0
chr2:160272523|160272782 hsa-miR-7106-3p -12 1 0
chr2:160272523|160272782 hsa-miR-2276-5p -13 1 0
chr2:160272523|160272782 hsa-miR-6871-3p -12 1 0
chr2:160272523|160272782 hsa-miR-6895-3p -11 1 0
chr2:160272523|160272782 hsa-miR-7848-3p -12 1 0
chr2:160272523|160272782 hsa-miR-6865-3p -7 1 0
chr2:160272523|160272782 hsa-miR-4728-5p -23 1 0
chr2:160272523|160272782 hsa-miR-3927-3p 0 1 0
chr2:160272523|160272782 hsa-miR-7159-3p -9 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:160272523|160272782
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MFLFLFHFFKVVVLLVLCSLEYYCFVKVQTERSTLCVPSTVINLGLSLLDIFALVKTEI
Nucleotide Sequence TTGTTTTTGTTTTTGTTTCATTTTTTTAAAGTTGTGGTATTATTGGTTCTATGCTCCCTGGAATATTACTGCTTTGTGAAAGTCCAGACTGAACGCAGCACCCTCTGTGTACCTAGTACAGTTATAAACCTGGGTCTCTCACTACTTGATATTTTTGCATTAGTTAAGACAGAAATTTGA
CircID chr2:160272523|160272782
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MCFCFCFCFIFLKLWYYWFYAPWNITAL
Nucleotide Sequence ATGTGTTTTTGTTTTTGTTTTTGTTTCATTTTTTTAAAGTTGTGGTATTATTGGTTCTATGCTCCCTGGAATATTACTGCTTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab