CircRNA Information

General Information
circRNA Basic Information
CircID chr2:164743687|164743875
Strand -
CircType exon
Host Gene ENSG00000082438.15;
Algorism find_circ;CIRI2;CIRC
Sequence GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:164743687|164743875 hsa-miR-452-5p 0 0 1
chr2:164743687|164743875 hsa-miR-452-3p 0 0 1
chr2:164743687|164743875 hsa-miR-506-5p 0 0 1
chr2:164743687|164743875 hsa-miR-506-3p 0 0 1
chr2:164743687|164743875 hsa-miR-570-5p 0 0 1
chr2:164743687|164743875 hsa-miR-570-3p 0 0 1
chr2:164743687|164743875 hsa-miR-577 0 0 1
chr2:164743687|164743875 hsa-miR-593-5p 0 0 1
chr2:164743687|164743875 hsa-miR-593-3p 0 0 1
chr2:164743687|164743875 hsa-miR-619-5p 0 0 1
chr2:164743687|164743875 hsa-miR-619-3p 0 0 1
chr2:164743687|164743875 hsa-miR-656-5p 0 0 1
chr2:164743687|164743875 hsa-miR-656-3p 0 0 1
chr2:164743687|164743875 hsa-miR-766-5p 0 0 1
chr2:164743687|164743875 hsa-miR-766-3p 0 0 1
chr2:164743687|164743875 hsa-miR-1236-5p 0 0 1
chr2:164743687|164743875 hsa-miR-1236-3p 0 0 1
chr2:164743687|164743875 hsa-miR-1206 0 0 1
chr2:164743687|164743875 hsa-miR-769-5p 0 0 1
chr2:164743687|164743875 hsa-miR-490-5p 0 0 1
chr2:164743687|164743875 hsa-miR-1207-3p 0 0 1
chr2:164743687|164743875 hsa-miR-124 0 0 1
chr2:164743687|164743875 hsa-miR-4298 1 1 0
chr2:164743687|164743875 hsa-miR-197-3p 0 1 0
chr2:164743687|164743875 hsa-miR-6857-5p 0 1 0
chr2:164743687|164743875 hsa-miR-4786-5p 0 1 0
chr2:164743687|164743875 hsa-miR-7845-5p 1 0 0
chr2:164743687|164743875 hsa-miR-3925-5p 0 1 0
chr2:164743687|164743875 hsa-miR-3922-5p 1 0 0
chr2:164743687|164743875 hsa-miR-216a-3p 1 0 0
chr2:164743687|164743875 hsa-miR-4680-5p 0 1 0
chr2:164743687|164743875 hsa-miR-1255b-2-3p 0 1 0
chr2:164743687|164743875 hsa-miR-6791-5p 1 0 0
chr2:164743687|164743875 hsa-miR-4691-5p 1 0 0
chr2:164743687|164743875 hsa-miR-203b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:164743687|164743875
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MFSFCSMMKAVDSTESAAEETSVYLVSAGGSGALAFGFL
Nucleotide Sequence ATGTTTTCTTTCTGTTCCATGATGAAAGCAGTGGATTCTACAGAATCAGCAGCTGAAGAGACATCAGTATATTTGGTCTCAGCTGGAGGAAGTGGTGCCTTGGCTTTTGGTTTTCTC
CircID chr2:164743687|164743875
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MEQKENMIDKDVELSVVLPGDIIKSTTVHG
Nucleotide Sequence ATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGC
CircID chr2:164743687|164743875
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MIISPGRTTESSTSLSIMFSFCSMMKAVDSTESAAEETSVYLVSAGGSGALAFGFL
Nucleotide Sequence TTGATAATATCCCCAGGTAGGACCACTGAGAGTTCAACGTCTTTATCTATCATGTTTTCTTTCTGTTCCATGATGAAAGCAGTGGATTCTACAGAATCAGCAGCTGAAGAGACATCAGTATATTTGGTCTCAGCTGGAGGAAGTGGTGCCTTGGCTTTTGGTTTTCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:164743687|164743875 NOP56 0 1 1
chr2:164743687|164743875 ELAVL1 0 2 0
chr2:164743687|164743875 PRPF8 0 2 0
chr2:164743687|164743875 UPF1 0 2 0
chr2:164743687|164743875 CPSF7 1 0 0
chr2:164743687|164743875 CPSF6 1 0 0
chr2:164743687|164743875 CPSF1 1 0 0
chr2:164743687|164743875 FUS 2 1 0
chr2:164743687|164743875 NOP58 0 1 0
chr2:164743687|164743875 U2AF2 1 7 0
chr2:164743687|164743875 SRSF9 0 0 1
chr2:164743687|164743875 DDX54 0 1 6
chr2:164743687|164743875 FIP1L1 1 0 0
chr2:164743687|164743875 PTBP1 1 0 0
chr2:164743687|164743875 ZNF184 0 1 0
chr2:164743687|164743875 LARP7 1 0 0
chr2:164743687|164743875 HNRNPA1 0 2 0
chr2:164743687|164743875 IGF2BP3 0 0 1
chr2:164743687|164743875 IGF2BP2 0 0 1
chr2:164743687|164743875 TARDBP 2 0 0
chr2:164743687|164743875 SLTM 1 0 0
chr2:164743687|164743875 CSTF2T 3 0 2
chr2:164743687|164743875 EIF4A3 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab