CircRNA Information

General Information
circRNA Basic Information
CircID chr2:168063500|168075231
Strand -
CircType exon
Host Gene ENSG00000198648.10;
Algorism find_circ;CIRI2;DCC;
Sequence GTAAGAAGAGTTCCTGGGTCAAGTGGTCACCTTCATAAAACCGAAGACGGGGACTGGGAGTGGAGTGACGACGAGATGGATGAGAAGAGCGAAGAAGGGAAAGCAGCTTTTTCTCAGGAAAAGTCACGAAGAGTAAAAGAAGAAAATCCAGAGATTGCAGTGAGTGCCAGCACCATCCCCGAACAAATACAGTCCCTCTCTGTGCACGACTCTCAGGGCCCACCCAATGCTAATGAAGACTACAGAGAAGCTTCTTCTTGTGCCGTGAACCTCGTTTTGAGATTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:168063500|168075231 hsa-miR-205-5p 0 0 1
chr2:168063500|168075231 hsa-miR-205-3p 0 0 1
chr2:168063500|168075231 hsa-miR-224-5p 0 0 1
chr2:168063500|168075231 hsa-miR-224-3p 0 0 1
chr2:168063500|168075231 hsa-miR-122-5p 0 0 1
chr2:168063500|168075231 hsa-miR-122-3p 0 0 1
chr2:168063500|168075231 hsa-miR-646 0 1 1
chr2:168063500|168075231 hsa-miR-873-5p 0 0 1
chr2:168063500|168075231 hsa-miR-873-3p 0 0 1
chr2:168063500|168075231 hsa-miR-1253 0 0 1
chr2:168063500|168075231 hsa-miR-1255a 0 0 1
chr2:168063500|168075231 hsa-miR-1266-5p 0 0 1
chr2:168063500|168075231 hsa-miR-1266-3p 0 0 1
chr2:168063500|168075231 hsa-miR-103a-2-5p 0 1 1
chr2:168063500|168075231 hsa-miR-525-5p 0 0 1
chr2:168063500|168075231 hsa-miR-483-5p 1 0 1
chr2:168063500|168075231 hsa-miR-520a-5p 0 0 1
chr2:168063500|168075231 hsa-miR-1255b 0 0 1
chr2:168063500|168075231 hsa-miR-1300 0 0 1
chr2:168063500|168075231 hsa-miR-583 0 1 0
chr2:168063500|168075231 hsa-miR-608 1 0 0
chr2:168063500|168075231 hsa-miR-762 1 0 0
chr2:168063500|168075231 hsa-miR-765 1 0 0
chr2:168063500|168075231 hsa-miR-1268a 1 0 0
chr2:168063500|168075231 hsa-miR-2861 1 0 0
chr2:168063500|168075231 hsa-miR-3131 1 0 0
chr2:168063500|168075231 hsa-miR-3154 1 1 0
chr2:168063500|168075231 hsa-miR-4270 1 0 0
chr2:168063500|168075231 hsa-miR-3916 1 0 0
chr2:168063500|168075231 hsa-miR-1268b 1 0 0
chr2:168063500|168075231 hsa-miR-4430 1 0 0
chr2:168063500|168075231 hsa-miR-4450 1 0 0
chr2:168063500|168075231 hsa-miR-4462 1 0 0
chr2:168063500|168075231 hsa-miR-4463 1 0 0
chr2:168063500|168075231 hsa-miR-3689c 1 0 0
chr2:168063500|168075231 hsa-miR-4488 1 0 0
chr2:168063500|168075231 hsa-miR-4505 1 0 0
chr2:168063500|168075231 hsa-miR-2392 1 0 0
chr2:168063500|168075231 hsa-miR-1587 1 0 0
chr2:168063500|168075231 hsa-miR-4651 1 0 0
chr2:168063500|168075231 hsa-miR-4706 1 0 0
chr2:168063500|168075231 hsa-miR-4739 1 0 0
chr2:168063500|168075231 hsa-miR-5191 1 0 0
chr2:168063500|168075231 hsa-miR-5703 1 1 0
chr2:168063500|168075231 hsa-miR-5787 1 0 0
chr2:168063500|168075231 hsa-miR-6085 1 0 0
chr2:168063500|168075231 hsa-miR-6088 1 0 0
chr2:168063500|168075231 hsa-miR-6124 1 1 0
chr2:168063500|168075231 hsa-miR-7515 0 1 0
chr2:168063500|168075231 hsa-miR-8052 1 1 0
chr2:168063500|168075231 hsa-miR-8085 1 0 0
chr2:168063500|168075231 hsa-miR-8089 1 0 0
chr2:168063500|168075231 hsa-miR-12115 1 1 0
chr2:168063500|168075231 hsa-miR-12128 1 1 0
chr2:168063500|168075231 hsa-miR-4433b-3p 1 0 0
chr2:168063500|168075231 hsa-miR-6894-5p 1 0 0
chr2:168063500|168075231 hsa-miR-139-3p 1 0 0
chr2:168063500|168075231 hsa-miR-1236-5p 1 1 0
chr2:168063500|168075231 hsa-miR-5187-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6089 1 0 0
chr2:168063500|168075231 hsa-miR-3192-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6880-5p 1 0 0
chr2:168063500|168075231 hsa-miR-7847-3p 1 0 0
chr2:168063500|168075231 hsa-miR-197-5p 1 0 0
chr2:168063500|168075231 hsa-miR-8069 1 0 0
chr2:168063500|168075231 hsa-miR-6716-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6871-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6732-5p 1 0 0
chr2:168063500|168075231 hsa-miR-23a-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6760-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6782-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6810-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6740-5p 1 0 0
chr2:168063500|168075231 hsa-miR-1908-5p 1 1 0
chr2:168063500|168075231 hsa-miR-4671-5p 0 1 0
chr2:168063500|168075231 hsa-miR-6847-5p 1 0 0
chr2:168063500|168075231 hsa-miR-3202 0 1 0
chr2:168063500|168075231 hsa-miR-7854-3p 1 0 0
chr2:168063500|168075231 hsa-miR-4787-5p 1 0 0
chr2:168063500|168075231 hsa-miR-4446-3p 1 0 0
chr2:168063500|168075231 hsa-miR-3162-5p 1 0 0
chr2:168063500|168075231 hsa-miR-4652-5p 0 1 0
chr2:168063500|168075231 hsa-miR-5197-3p 0 1 0
chr2:168063500|168075231 hsa-miR-3664-3p 0 1 0
chr2:168063500|168075231 hsa-miR-5587-5p 0 1 0
chr2:168063500|168075231 hsa-miR-1207-5p 1 0 0
chr2:168063500|168075231 hsa-miR-3689b-3p 1 0 0
chr2:168063500|168075231 hsa-miR-6812-5p 1 1 0
chr2:168063500|168075231 hsa-miR-5001-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6737-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6752-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6803-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6819-5p 1 0 0
chr2:168063500|168075231 hsa-miR-7110-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6751-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6763-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6780a-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6788-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6797-5p 1 0 0
chr2:168063500|168075231 hsa-miR-7111-5p 1 0 0
chr2:168063500|168075231 hsa-miR-3620-5p 1 0 0
chr2:168063500|168075231 hsa-miR-4728-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6780b-5p 1 0 0
chr2:168063500|168075231 hsa-miR-10396b-5p 1 0 0
chr2:168063500|168075231 hsa-miR-1237-5p 1 0 0
chr2:168063500|168075231 hsa-miR-3689a-3p 1 0 0
chr2:168063500|168075231 hsa-miR-4745-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6777-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6794-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6795-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6846-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6848-5p 1 1 0
chr2:168063500|168075231 hsa-miR-6858-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6887-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6889-5p 1 0 0
chr2:168063500|168075231 hsa-miR-4769-5p 1 0 0
chr2:168063500|168075231 hsa-miR-365a-5p 1 0 0
chr2:168063500|168075231 hsa-miR-6856-5p 1 0 0
chr2:168063500|168075231 hsa-miR-10398-3p 1 0 0
chr2:168063500|168075231 hsa-miR-4646-5p 1 0 0
chr2:168063500|168075231 hsa-miR-4747-5p 1 1 0
chr2:168063500|168075231 hsa-miR-9851-5p 1 0 0
chr2:168063500|168075231 hsa-miR-1255b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:168063500|168075231
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MDEKSEEGKAAFSQEKSRRVKEENPEIAVSASTIPEQIQSLSVHDSQGPPNANEDYREASSCAVNLVLRL
Nucleotide Sequence ATGGATGAGAAGAGCGAAGAAGGGAAAGCAGCTTTTTCTCAGGAAAAGTCACGAAGAGTAAAAGAAGAAAATCCAGAGATTGCAGTGAGTGCCAGCACCATCCCCGAACAAATACAGTCCCTCTCTGTGCACGACTCTCAGGGCCCACCCAATGCTAATGAAGACTACAGAGAAGCTTCTTCTTGTGCCGTGAACCTCGTTTTGAGATTA
CircID chr2:168063500|168075231
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence VGPESRAQRGTVFVRGWCWHSLQSLDFLLLLFVTFPEKKLLSLLRSSHPSRRHSTPSPRLRFYEGDHLTQELFL
Nucleotide Sequence GTGGGCCCTGAGAGTCGTGCACAGAGAGGGACTGTATTTGTTCGGGGATGGTGCTGGCACTCACTGCAATCTCTGGATTTTCTTCTTTTACTCTTCGTGACTTTTCCTGAGAAAAAGCTGCTTTCCCTTCTTCGCTCTTCTCATCCATCTCGTCGTCACTCCACTCCCAGTCCCCGTCTTCGGTTTTATGAAGGTGACCACTTGACCCAGGAACTCTTCTTA
CircID chr2:168063500|168075231
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRKSCFPFFALLIHLVVTPLPVPVFGFMKVTT
Nucleotide Sequence CTGAGAAAAAGCTGCTTTCCCTTCTTCGCTCTTCTCATCCATCTCGTCGTCACTCCACTCCCAGTCCCCGTCTTCGGTTTTATGAAGGTGACCACTTGA
CircID chr2:168063500|168075231
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MDFLLLLFVTFPEKKLLSLLRSSHPSRRHSTPSPRLRFYEGDHLTQELFL
Nucleotide Sequence CTGGATTTTCTTCTTTTACTCTTCGTGACTTTTCCTGAGAAAAAGCTGCTTTCCCTTCTTCGCTCTTCTCATCCATCTCGTCGTCACTCCACTCCCAGTCCCCGTCTTCGGTTTTATGAAGGTGACCACTTGACCCAGGAACTCTTCTTA
CircID chr2:168063500|168075231
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MDEKSEEGKAAFSQEKSRRVKEENPEIK
Nucleotide Sequence ATGGATGAGAAGAGCGAAGAAGGGAAAGCAGCTTTTTCTCAGGAAAAGTCACGAAGAGTAAAAGAAGAAAATCCAGAGATTAAG
CircID chr2:168063500|168075231
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MGQVVTFIKPKTGTGSGVTTRWMRRAKKGKQLFLRKSHEE
Nucleotide Sequence CTGGGTCAAGTGGTCACCTTCATAAAACCGAAGACGGGGACTGGGAGTGGAGTGACGACGAGATGGATGAGAAGAGCGAAGAAGGGAAAGCAGCTTTTTCTCAGGAAAAGTCACGAAGAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:168063500|168075231 YTHDC1 0 1 0
chr2:168063500|168075231 FBL 0 0 1
chr2:168063500|168075231 BUD13 0 0 1
chr2:168063500|168075231 ELAVL1 0 2 1
chr2:168063500|168075231 ELAVL3 0 1 0
chr2:168063500|168075231 MSI1 0 1 0
chr2:168063500|168075231 CSTF2T 0 0 1
chr2:168063500|168075231 DDX54 0 1 9
chr2:168063500|168075231 EWSR1 1 0 0
chr2:168063500|168075231 FUS 1 0 0
chr2:168063500|168075231 TAF15 0 1 0
chr2:168063500|168075231 SRSF1 0 0 1
chr2:168063500|168075231 IGF2BP2 0 0 6
chr2:168063500|168075231 TRA2A 0 0 1
chr2:168063500|168075231 EIF4A3 0 0 3
chr2:168063500|168075231 NOP58 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab