CircRNA Information

General Information
circRNA Basic Information
CircID chr2:170361656|170361777
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCTTTACCTTGAATCTGTGCCCCATCTTGACCTGCTACTTGGCTCTGGCCTGGTTCACTTGGCCCTTCTAACTTCATGTCATTTGTTTAGCACTTTTACATCTCTCTCTCTTTTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:170361656|170361777 hsa-miR-17-5p 0 0 1
chr2:170361656|170361777 hsa-miR-17-3p 0 0 1
chr2:170361656|170361777 hsa-miR-20a-5p 0 0 1
chr2:170361656|170361777 hsa-miR-20a-3p 0 0 1
chr2:170361656|170361777 hsa-miR-93-5p 0 0 1
chr2:170361656|170361777 hsa-miR-93-3p 0 0 1
chr2:170361656|170361777 hsa-miR-106a-5p 0 0 1
chr2:170361656|170361777 hsa-miR-106a-3p 0 0 1
chr2:170361656|170361777 hsa-miR-106b-5p 0 0 1
chr2:170361656|170361777 hsa-miR-106b-3p 0 0 1
chr2:170361656|170361777 hsa-miR-302a-5p 0 0 1
chr2:170361656|170361777 hsa-miR-302a-3p 0 0 1
chr2:170361656|170361777 hsa-miR-302b-5p 0 0 1
chr2:170361656|170361777 hsa-miR-302b-3p 0 0 1
chr2:170361656|170361777 hsa-miR-302c-5p 0 0 1
chr2:170361656|170361777 hsa-miR-302c-3p 0 0 1
chr2:170361656|170361777 hsa-miR-302d-5p 0 0 1
chr2:170361656|170361777 hsa-miR-302d-3p 0 0 1
chr2:170361656|170361777 hsa-miR-372-5p 0 0 1
chr2:170361656|170361777 hsa-miR-372-3p 0 0 1
chr2:170361656|170361777 hsa-miR-373-5p 0 0 1
chr2:170361656|170361777 hsa-miR-373-3p 0 0 1
chr2:170361656|170361777 hsa-miR-20b-5p 0 0 1
chr2:170361656|170361777 hsa-miR-20b-3p 0 0 1
chr2:170361656|170361777 hsa-miR-520e-5p 0 0 1
chr2:170361656|170361777 hsa-miR-520e-3p 0 0 1
chr2:170361656|170361777 hsa-miR-520b-5p 0 0 1
chr2:170361656|170361777 hsa-miR-520b-3p 0 0 1
chr2:170361656|170361777 hsa-miR-519d-5p 0 0 1
chr2:170361656|170361777 hsa-miR-519d-3p 0 0 1
chr2:170361656|170361777 hsa-miR-562 0 0 1
chr2:170361656|170361777 hsa-miR-583 0 0 1
chr2:170361656|170361777 hsa-miR-548n 0 0 1
chr2:170361656|170361777 hsa-miR-1276 0 0 1
chr2:170361656|170361777 hsa-miR-302e 0 0 1
chr2:170361656|170361777 hsa-miR-486-3p 0 0 1
chr2:170361656|170361777 hsa-miR-520d-3p 0 0 1
chr2:170361656|170361777 hsa-miR-520a-3p 0 0 1
chr2:170361656|170361777 hsa-miR-520c-3p 0 0 1
chr2:170361656|170361777 hsa-miR-3147 1 0 0
chr2:170361656|170361777 hsa-miR-4260 1 0 0
chr2:170361656|170361777 hsa-miR-3621 1 0 0
chr2:170361656|170361777 hsa-miR-3945 1 0 0
chr2:170361656|170361777 hsa-miR-4428 1 0 0
chr2:170361656|170361777 hsa-miR-4644 1 0 0
chr2:170361656|170361777 hsa-miR-5739 1 0 0
chr2:170361656|170361777 hsa-miR-5787 1 0 0
chr2:170361656|170361777 hsa-miR-6088 1 0 0
chr2:170361656|170361777 hsa-miR-6124 1 0 0
chr2:170361656|170361777 hsa-miR-6165 1 0 0
chr2:170361656|170361777 hsa-miR-3622a-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6721-5p 1 0 0
chr2:170361656|170361777 hsa-miR-197-5p 1 0 0
chr2:170361656|170361777 hsa-miR-3151-5p 1 0 0
chr2:170361656|170361777 hsa-miR-3180-3p 1 0 0
chr2:170361656|170361777 hsa-miR-6760-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6786-5p 1 0 0
chr2:170361656|170361777 hsa-miR-4640-5p 1 0 0
chr2:170361656|170361777 hsa-miR-4690-5p 1 0 0
chr2:170361656|170361777 hsa-miR-423-5p 1 0 0
chr2:170361656|170361777 hsa-miR-1207-5p 1 0 0
chr2:170361656|170361777 hsa-miR-1233-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6893-5p 1 0 0
chr2:170361656|170361777 hsa-miR-10396b-5p 1 0 0
chr2:170361656|170361777 hsa-miR-328-5p 1 0 0
chr2:170361656|170361777 hsa-miR-4685-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6885-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6758-5p 1 0 0
chr2:170361656|170361777 hsa-miR-6856-5p 1 0 0
chr2:170361656|170361777 hsa-miR-10527-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:170361656|170361777
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLLGSGLVHLALLTSCHLFSTFTSLSLFP
Nucleotide Sequence CTGCTACTTGGCTCTGGCCTGGTTCACTTGGCCCTTCTAACTTCATGTCATTTGTTTAGCACTTTTACATCTCTCTCTCTTTTTCCT
CircID chr2:170361656|170361777
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MKLEGPSEPGQSQVAGQDGAQIQGKE
Nucleotide Sequence ATGAAGTTAGAAGGGCCAAGTGAACCAGGCCAGAGCCAAGTAGCAGGTCAAGATGGGGCACAGATTCAAGGTAAAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab