CircRNA Information

General Information
circRNA Basic Information
CircID chr2:174562401|174562550
Strand -
CircType exon
Host Gene ENSG00000115935.15;
Algorism CIRI2;
Sequence CCACACACGCATATTCCCACTCCCCCTCCCACCTTTCCTCCTGCCCATACATGAGGCACAAGGGAAGAAGCAGGGAGGAGGGTATGCAGTTCTTAGATAGCAACAGAAGCAGCTCTTGAGCTTGGGTAGAGAAGAGCAGGCAAAGATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:174562401|174562550 hsa-miR-204-5p 0 0 1
chr2:174562401|174562550 hsa-miR-204-3p 0 0 1
chr2:174562401|174562550 hsa-miR-211-5p 0 0 1
chr2:174562401|174562550 hsa-miR-211-3p 0 0 1
chr2:174562401|174562550 hsa-miR-217-5p 0 0 1
chr2:174562401|174562550 hsa-miR-217-3p 0 0 1
chr2:174562401|174562550 hsa-miR-335-5p 0 0 1
chr2:174562401|174562550 hsa-miR-335-3p 0 0 1
chr2:174562401|174562550 hsa-miR-558 0 0 1
chr2:174562401|174562550 hsa-miR-623 0 0 1
chr2:174562401|174562550 hsa-miR-942-5p 0 0 1
chr2:174562401|174562550 hsa-miR-942-3p 0 0 1
chr2:174562401|174562550 hsa-miR-1267 0 0 1
chr2:174562401|174562550 hsa-miR-548b-3p 0 0 1
chr2:174562401|174562550 hsa-miR-550 0 0 1
chr2:174562401|174562550 hsa-miR-644 0 0 1
chr2:174562401|174562550 hsa-miR-147 0 0 1
chr2:174562401|174562550 hsa-miR-636 1 0 0
chr2:174562401|174562550 hsa-miR-4511 0 1 0
chr2:174562401|174562550 hsa-miR-5193 0 1 0
chr2:174562401|174562550 hsa-miR-5698 0 1 0
chr2:174562401|174562550 hsa-miR-7150 0 1 0
chr2:174562401|174562550 hsa-miR-103a-2-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6854-5p 1 0 0
chr2:174562401|174562550 hsa-miR-4722-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6730-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6762-3p 0 1 0
chr2:174562401|174562550 hsa-miR-1915-5p 1 0 0
chr2:174562401|174562550 hsa-miR-6845-3p 0 1 0
chr2:174562401|174562550 hsa-miR-6728-3p 1 0 0
chr2:174562401|174562550 hsa-miR-30b-3p 0 1 0
chr2:174562401|174562550 hsa-miR-6882-3p 1 0 0
chr2:174562401|174562550 hsa-miR-6894-3p 0 1 0
chr2:174562401|174562550 hsa-miR-6514-3p 1 1 0
chr2:174562401|174562550 hsa-miR-7161-3p 1 0 0
chr2:174562401|174562550 hsa-miR-7113-3p 0 1 0
chr2:174562401|174562550 hsa-miR-1228-5p 0 1 0
chr2:174562401|174562550 hsa-miR-149-3p 0 1 0
chr2:174562401|174562550 hsa-miR-4778-3p 0 1 0
chr2:174562401|174562550 hsa-miR-7848-3p 0 1 0
chr2:174562401|174562550 hsa-miR-6738-3p 1 0 0
chr2:174562401|174562550 hsa-miR-3670 1 0 0
chr2:174562401|174562550 hsa-miR-6759-3p 1 0 0
chr2:174562401|174562550 hsa-miR-367-5p 1 0 0
chr2:174562401|174562550 hsa-miR-1207-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6778-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6870-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6756-5p 0 1 0
chr2:174562401|174562550 hsa-miR-10401-5p 1 0 0
chr2:174562401|174562550 hsa-miR-6779-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6879-5p 1 1 0
chr2:174562401|174562550 hsa-miR-7111-5p 0 1 0
chr2:174562401|174562550 hsa-miR-320a-5p 0 1 0
chr2:174562401|174562550 hsa-miR-4728-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6794-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6883-5p 0 1 0
chr2:174562401|174562550 hsa-miR-1238-5p 1 0 0
chr2:174562401|174562550 hsa-miR-1271-3p 1 0 0
chr2:174562401|174562550 hsa-miR-4716-3p 0 1 0
chr2:174562401|174562550 hsa-miR-4723-3p 0 1 0
chr2:174562401|174562550 hsa-miR-103a-1-5p 0 1 0
chr2:174562401|174562550 hsa-miR-6807-3p 0 1 0
chr2:174562401|174562550 hsa-miR-3121-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:174562401|174562550
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MHTLLPASSLVPHVWAGGKVGGGVGICVC
Nucleotide Sequence CTGCATACCCTCCTCCCTGCTTCTTCCCTTGTGCCTCATGTATGGGCAGGAGGAAAGGTGGGAGGGGGAGTGGGAATATGCGTGTGT
CircID chr2:174562401|174562550
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MLFSTQAQELLLLLSKNCIPSSLLLPLCLMYGQEERWEGEWEYACV
Nucleotide Sequence CTGCTCTTCTCTACCCAAGCTCAAGAGCTGCTTCTGTTGCTATCTAAGAACTGCATACCCTCCTCCCTGCTTCTTCCCTTGTGCCTCATGTATGGGCAGGAGGAAAGGTGGGAGGGGGAGTGGGAATATGCGTGTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab