CircRNA Information

General Information
circRNA Basic Information
CircID chr2:178450511|178450617
Strand +
CircType exon
Host Gene ENSG00000180228.11;
Algorism CIRI2;
Sequence CTCGCTCACCCCGCCTGCTCCTGCGGAGTGACTGCCGCAGCGGGGCCGGAAGACAGGTGCGCCCCAGCCTCGCCAGCTCTGGCCCTGGCCTCCGGGGAACTCGGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:178450511|178450617 hsa-miR-668-5p 0 0 1
chr2:178450511|178450617 hsa-miR-668-3p 0 0 1
chr2:178450511|178450617 hsa-miR-1180-5p 0 0 1
chr2:178450511|178450617 hsa-miR-1180-3p 0 0 1
chr2:178450511|178450617 hsa-miR-485-5p 0 0 1
chr2:178450511|178450617 hsa-miR-483-3p 0 0 1
chr2:178450511|178450617 hsa-miR-663 0 0 1
chr2:178450511|178450617 hsa-miR-637 1 0 0
chr2:178450511|178450617 hsa-miR-663a 1 1 0
chr2:178450511|178450617 hsa-miR-762 1 0 0
chr2:178450511|178450617 hsa-miR-3918 0 1 0
chr2:178450511|178450617 hsa-miR-4492 1 0 0
chr2:178450511|178450617 hsa-miR-4505 1 0 0
chr2:178450511|178450617 hsa-miR-4508 1 0 0
chr2:178450511|178450617 hsa-miR-3960 1 0 0
chr2:178450511|178450617 hsa-miR-4682 0 1 0
chr2:178450511|178450617 hsa-miR-5787 1 1 0
chr2:178450511|178450617 hsa-miR-6069 1 0 0
chr2:178450511|178450617 hsa-miR-6081 0 1 0
chr2:178450511|178450617 hsa-miR-6085 1 0 0
chr2:178450511|178450617 hsa-miR-6132 1 0 0
chr2:178450511|178450617 hsa-miR-211-3p 1 0 0
chr2:178450511|178450617 hsa-miR-4731-5p 0 1 0
chr2:178450511|178450617 hsa-miR-4433a-3p 1 0 0
chr2:178450511|178450617 hsa-miR-125a-3p 1 0 0
chr2:178450511|178450617 hsa-miR-6089 1 1 0
chr2:178450511|178450617 hsa-miR-6746-5p 1 0 0
chr2:178450511|178450617 hsa-miR-4722-5p 0 1 0
chr2:178450511|178450617 hsa-miR-7855-5p 1 0 0
chr2:178450511|178450617 hsa-miR-5006-5p 0 1 0
chr2:178450511|178450617 hsa-miR-4640-5p 1 1 0
chr2:178450511|178450617 hsa-miR-6753-5p 1 0 0
chr2:178450511|178450617 hsa-miR-1908-5p 1 1 0
chr2:178450511|178450617 hsa-miR-4690-5p 1 1 0
chr2:178450511|178450617 hsa-miR-6789-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6886-5p 0 1 0
chr2:178450511|178450617 hsa-miR-423-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6804-3p 0 1 0
chr2:178450511|178450617 hsa-miR-744-5p 1 1 0
chr2:178450511|178450617 hsa-miR-4763-3p 1 0 0
chr2:178450511|178450617 hsa-miR-6787-5p 1 1 0
chr2:178450511|178450617 hsa-miR-6743-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6813-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6722-3p 1 0 0
chr2:178450511|178450617 hsa-miR-3620-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6836-5p 1 0 0
chr2:178450511|178450617 hsa-miR-10396b-5p 1 1 0
chr2:178450511|178450617 hsa-miR-4649-5p 1 0 0
chr2:178450511|178450617 hsa-miR-4685-5p 1 1 0
chr2:178450511|178450617 hsa-miR-4726-5p 1 1 0
chr2:178450511|178450617 hsa-miR-6729-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6848-5p 1 0 0
chr2:178450511|178450617 hsa-miR-10398-3p 1 1 0
chr2:178450511|178450617 hsa-miR-6724-5p 1 0 0
chr2:178450511|178450617 hsa-miR-6837-5p 0 1 0
chr2:178450511|178450617 hsa-miR-10392-3p 1 1 0
chr2:178450511|178450617 hsa-miR-5699-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:178450511|178450617
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MPQRGRKTGAPQPRQLWPWPPGNSA
Nucleotide Sequence CTGCCGCAGCGGGGCCGGAAGACAGGTGCGCCCCAGCCTCGCCAGCTCTGGCCCTGGCCTCCGGGGAACTCGGCG
CircID chr2:178450511|178450617
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLLRSDCRSGAGRQVRPSLASSGPGLRGTRR
Nucleotide Sequence CTGCTCCTGCGGAGTGACTGCCGCAGCGGGGCCGGAAGACAGGTGCGCCCCAGCCTCGCCAGCTCTGGCCCTGGCCTCCGGGGAACTCGGCGC
CircID chr2:178450511|178450617
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MARLGRTCLPAPLRQSLRRSRRGER
Nucleotide Sequence CTGGCGAGGCTGGGGCGCACCTGTCTTCCGGCCCCGCTGCGGCAGTCACTCCGCAGGAGCAGGCGGGGTGAGCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab