CircRNA Information

General Information
circRNA Basic Information
CircID chr2:186505464|186506730
Strand +
CircType exon
Host Gene ENSG00000065548.16;
Algorism CIRI2;
Sequence ACTCACTGAATCATCAACCTCATCACCACCTGTTCCCTGGGTGTAGCGGGTATCATCTGCTTCCTCATCATCATCATTGACCAGTTCAGGACGAAATTCAAACACTTCACGACCACTGATCTATTGAGACACACAAATATATCAACTCAGGACAAAAATCTAAACATTCCTTGTCACTGATGAAATAGAAACAAAATCTTGCATGACACAGAAATTGAAAATGGAAGAATAAAGAATCAGTTTGGGTGAGCCTGAGACATACCACTAGTGCTTTCCCTGCTTTGAAGTCAGCTTTCCTTCTTTCCATATCTTGTTCAAGTTTATCAATCTTTTCTTGTCTTTTCCTTTTCTTCCAGGCAAGAAAAGATTCTAGAGTGATTTTGGTAACATTTGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:186505464|186506730 hsa-miR-206 0 0 1
chr2:186505464|186506730 hsa-miR-320a-5p 0 0 1
chr2:186505464|186506730 hsa-miR-320a-3p 0 0 1
chr2:186505464|186506730 hsa-miR-34b-5p 0 0 1
chr2:186505464|186506730 hsa-miR-34b-3p 0 0 1
chr2:186505464|186506730 hsa-miR-484 0 0 1
chr2:186505464|186506730 hsa-miR-552-5p 0 0 1
chr2:186505464|186506730 hsa-miR-552-3p 0 0 1
chr2:186505464|186506730 hsa-miR-571 0 0 1
chr2:186505464|186506730 hsa-miR-573 0 0 1
chr2:186505464|186506730 hsa-miR-578 0 0 1
chr2:186505464|186506730 hsa-miR-592 0 1 1
chr2:186505464|186506730 hsa-miR-597-5p 0 0 1
chr2:186505464|186506730 hsa-miR-597-3p 0 0 1
chr2:186505464|186506730 hsa-miR-599 0 0 1
chr2:186505464|186506730 hsa-miR-613 0 0 1
chr2:186505464|186506730 hsa-miR-617 0 0 1
chr2:186505464|186506730 hsa-miR-661 0 0 1
chr2:186505464|186506730 hsa-miR-1200 0 0 1
chr2:186505464|186506730 hsa-miR-1305 0 0 1
chr2:186505464|186506730 hsa-miR-1266-5p 0 0 1
chr2:186505464|186506730 hsa-miR-1266-3p 0 0 1
chr2:186505464|186506730 hsa-miR-1272 0 1 1
chr2:186505464|186506730 hsa-miR-1252-5p 0 0 1
chr2:186505464|186506730 hsa-miR-1252-3p 0 0 1
chr2:186505464|186506730 hsa-miR-140-5p 0 0 1
chr2:186505464|186506730 hsa-miR-330-3p 0 0 1
chr2:186505464|186506730 hsa-miR-654-3p 0 0 1
chr2:186505464|186506730 hsa-miR-320b 0 1 1
chr2:186505464|186506730 hsa-miR-320c 0 1 1
chr2:186505464|186506730 hsa-miR-320d 0 1 1
chr2:186505464|186506730 hsa-miR-582-3p 0 0 1
chr2:186505464|186506730 hsa-miR-7 0 0 1
chr2:186505464|186506730 hsa-miR-1 0 0 1
chr2:186505464|186506730 hsa-miR-1254 0 0 1
chr2:186505464|186506730 hsa-miR-147 0 0 1
chr2:186505464|186506730 hsa-miR-219-1-3p 0 0 1
chr2:186505464|186506730 hsa-miR-581 0 1 0
chr2:186505464|186506730 hsa-miR-608 1 0 0
chr2:186505464|186506730 hsa-miR-1293 1 0 0
chr2:186505464|186506730 hsa-miR-378b 1 0 0
chr2:186505464|186506730 hsa-miR-3153 0 1 0
chr2:186505464|186506730 hsa-miR-3154 1 0 0
chr2:186505464|186506730 hsa-miR-4298 1 0 0
chr2:186505464|186506730 hsa-miR-4270 1 0 0
chr2:186505464|186506730 hsa-miR-3915 0 1 0
chr2:186505464|186506730 hsa-miR-3945 1 0 0
chr2:186505464|186506730 hsa-miR-4429 0 1 0
chr2:186505464|186506730 hsa-miR-4460 1 1 0
chr2:186505464|186506730 hsa-miR-4502 0 1 0
chr2:186505464|186506730 hsa-miR-4539 0 1 0
chr2:186505464|186506730 hsa-miR-4644 0 1 0
chr2:186505464|186506730 hsa-miR-4706 1 0 0
chr2:186505464|186506730 hsa-miR-4710 1 0 0
chr2:186505464|186506730 hsa-miR-4739 1 0 0
chr2:186505464|186506730 hsa-miR-6124 0 1 0
chr2:186505464|186506730 hsa-miR-6165 1 0 0
chr2:186505464|186506730 hsa-miR-7974 1 0 0
chr2:186505464|186506730 hsa-miR-8089 1 0 0
chr2:186505464|186506730 hsa-miR-12128 1 0 0
chr2:186505464|186506730 hsa-miR-500b-3p 0 1 0
chr2:186505464|186506730 hsa-miR-323a-5p 1 0 0
chr2:186505464|186506730 hsa-miR-7106-5p 1 0 0
chr2:186505464|186506730 hsa-miR-5187-5p 1 0 0
chr2:186505464|186506730 hsa-miR-4695-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6730-5p 1 0 0
chr2:186505464|186506730 hsa-miR-138-2-3p 0 1 0
chr2:186505464|186506730 hsa-miR-4655-5p 1 0 0
chr2:186505464|186506730 hsa-miR-7845-5p 1 0 0
chr2:186505464|186506730 hsa-miR-3663-5p 1 0 0
chr2:186505464|186506730 hsa-miR-1292-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6760-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6782-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6810-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6828-5p 0 1 0
chr2:186505464|186506730 hsa-miR-7113-5p 1 1 0
chr2:186505464|186506730 hsa-miR-576-3p 0 1 0
chr2:186505464|186506730 hsa-miR-7158-5p 0 1 0
chr2:186505464|186506730 hsa-miR-4482-3p 0 1 0
chr2:186505464|186506730 hsa-miR-1207-5p 1 0 0
chr2:186505464|186506730 hsa-miR-4763-3p 1 0 0
chr2:186505464|186506730 hsa-miR-6726-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6754-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6756-5p 1 0 0
chr2:186505464|186506730 hsa-miR-1249-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6722-3p 1 0 0
chr2:186505464|186506730 hsa-miR-6751-5p 1 0 0
chr2:186505464|186506730 hsa-miR-1915-3p 1 0 0
chr2:186505464|186506730 hsa-miR-5196-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6836-5p 1 0 0
chr2:186505464|186506730 hsa-miR-1909-3p 1 0 0
chr2:186505464|186506730 hsa-miR-4685-5p 1 0 0
chr2:186505464|186506730 hsa-miR-3116 0 1 0
chr2:186505464|186506730 hsa-miR-3679-5p 1 0 0
chr2:186505464|186506730 hsa-miR-4646-5p 1 0 0
chr2:186505464|186506730 hsa-miR-6750-5p 1 1 0
chr2:186505464|186506730 hsa-miR-6822-5p 0 1 0
chr2:186505464|186506730 hsa-miR-6529-5p 1 0 0
chr2:186505464|186506730 hsa-miR-10397-3p 1 0 0
chr2:186505464|186506730 hsa-miR-6835-3p 0 1 0
chr2:186505464|186506730 hsa-miR-491-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:186505464|186506730
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MGVAGIICFLIIIIDQFRTKFKHFTTTDLLRHTNISTQDKNLNIPCH
Nucleotide Sequence CTGGGTGTAGCGGGTATCATCTGCTTCCTCATCATCATCATTGACCAGTTCAGGACGAAATTCAAACACTTCACGACCACTGATCTATTGAGACACACAAATATATCAACTCAGGACAAAAATCTAAACATTCCTTGTCACTGA
CircID chr2:186505464|186506730
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MRHTTSAFPALKSAFLLSISCSSLSIFSCLFLFFQARKDSRVILVTFG
Nucleotide Sequence CTGAGACATACCACTAGTGCTTTCCCTGCTTTGAAGTCAGCTTTCCTTCTTTCCATATCTTGTTCAAGTTTATCAATCTTTTCTTGTCTTTTCCTTTTCTTCCAGGCAAGAAAAGATTCTAGAGTGATTTTGGTAACATTTGGA
CircID chr2:186505464|186506730
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MPGRKGKDKKRLINLNKIWKEGKLTSKQGKH
Nucleotide Sequence TTGCCTGGAAGAAAAGGAAAAGACAAGAAAAGATTGATAAACTTGAACAAGATATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAG
CircID chr2:186505464|186506730
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MILYSSIFNFCVMQDFVSISSVTRNV
Nucleotide Sequence CTGATTCTTTATTCTTCCATTTTCAATTTCTGTGTCATGCAAGATTTTGTTTCTATTTCATCAGTGACAAGGAATGTTTAG
CircID chr2:186505464|186506730
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MVNDDDEEADDTRYTQGTGGDEVDDSVS
Nucleotide Sequence CTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGAGGTTGATGATTCAGTGAGT
CircID chr2:186505464|186506730
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MNFVLNWSMMMMRKQMIPATPREQVVMRLMIQ
Nucleotide Sequence TTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGAGGTTGATGATTCAGTGA
CircID chr2:186505464|186506730
ORF Type ORF7
Protein Length 66
Nucleotide Length 201
Protein Sequence MERRKADFKAGKALVVCLRLTQTDSLFFHFQFLCHARFCFYFISDKECLDFCPELIYLCVSIDQWS
Nucleotide Sequence ATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGGTATGTCTCAGGCTCACCCAAACTGATTCTTTATTCTTCCATTTTCAATTTCTGTGTCATGCAAGATTTTGTTTCTATTTCATCAGTGACAAGGAATGTTTAGATTTTTGTCCTGAGTTGATATATTTGTGTGTCTCAATAGATCAGTGGTCGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab