CircRNA Information

General Information
circRNA Basic Information
CircID chr2:188999340|188999545
Strand +
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence CTCCTCTTTCTCCAGGCATTCCTTGCAGACCAGGAGTACCAGCAGCACCAGGTGGCCCAGGAGGACCAGCAGCACCCTGAAAATAAGTGAGAAATAATAAATGATCAGAAGGAAATCAAATGCATTTTTTAAACCTAGGTGAATGGAATGCTGTGGAGTTACCTTTCCTCCTTCGGGACCAGGGGGACCAGCTCCACCTCTAAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:188999340|188999545 hsa-miR-583 0 0 1
chr2:188999340|188999545 hsa-miR-586 0 0 1
chr2:188999340|188999545 hsa-miR-661 0 0 1
chr2:188999340|188999545 hsa-miR-877-5p 0 0 1
chr2:188999340|188999545 hsa-miR-877-3p 0 0 1
chr2:188999340|188999545 hsa-miR-1179 0 1 1
chr2:188999340|188999545 hsa-miR-1229-5p 0 0 1
chr2:188999340|188999545 hsa-miR-1229-3p 0 0 1
chr2:188999340|188999545 hsa-miR-1237-5p 0 0 1
chr2:188999340|188999545 hsa-miR-1237-3p 0 0 1
chr2:188999340|188999545 hsa-miR-1248 0 0 1
chr2:188999340|188999545 hsa-miR-548m 0 0 1
chr2:188999340|188999545 hsa-miR-331-3p 0 0 1
chr2:188999340|188999545 hsa-miR-138 0 0 1
chr2:188999340|188999545 hsa-miR-1254 0 0 1
chr2:188999340|188999545 hsa-miR-133b 0 1 0
chr2:188999340|188999545 hsa-miR-608 1 0 0
chr2:188999340|188999545 hsa-miR-612 1 0 0
chr2:188999340|188999545 hsa-miR-4281 1 1 0
chr2:188999340|188999545 hsa-miR-4292 1 0 0
chr2:188999340|188999545 hsa-miR-3909 1 0 0
chr2:188999340|188999545 hsa-miR-548ai 0 1 0
chr2:188999340|188999545 hsa-miR-4527 0 1 0
chr2:188999340|188999545 hsa-miR-6131 0 1 0
chr2:188999340|188999545 hsa-miR-6860 1 0 0
chr2:188999340|188999545 hsa-miR-12114 0 1 0
chr2:188999340|188999545 hsa-miR-12115 1 0 0
chr2:188999340|188999545 hsa-miR-12118 0 1 0
chr2:188999340|188999545 hsa-miR-370-3p 1 0 0
chr2:188999340|188999545 hsa-miR-3692-5p 0 1 0
chr2:188999340|188999545 hsa-miR-6741-5p 1 0 0
chr2:188999340|188999545 hsa-miR-6762-3p 0 1 0
chr2:188999340|188999545 hsa-miR-874-3p 1 0 0
chr2:188999340|188999545 hsa-miR-3663-5p 1 1 0
chr2:188999340|188999545 hsa-miR-185-3p 1 1 0
chr2:188999340|188999545 hsa-miR-6874-5p 0 1 0
chr2:188999340|188999545 hsa-miR-939-3p 1 1 0
chr2:188999340|188999545 hsa-miR-4640-5p 1 0 0
chr2:188999340|188999545 hsa-miR-6823-5p 1 0 0
chr2:188999340|188999545 hsa-miR-6830-5p 0 1 0
chr2:188999340|188999545 hsa-miR-7152-3p 0 1 0
chr2:188999340|188999545 hsa-miR-660-3p 0 1 0
chr2:188999340|188999545 hsa-miR-4746-3p 1 0 0
chr2:188999340|188999545 hsa-miR-133a-3p 0 1 0
chr2:188999340|188999545 hsa-miR-6751-5p 1 0 0
chr2:188999340|188999545 hsa-miR-4726-5p 1 0 0
chr2:188999340|188999545 hsa-miR-6848-5p 1 0 0
chr2:188999340|188999545 hsa-miR-3187-5p 1 0 0
chr2:188999340|188999545 hsa-miR-939-5p 1 0 0
chr2:188999340|188999545 hsa-miR-3116 0 1 0
chr2:188999340|188999545 hsa-miR-3173-3p 0 1 0
chr2:188999340|188999545 hsa-miR-6837-5p 1 0 0
chr2:188999340|188999545 hsa-miR-6783-3p 1 1 0
chr2:188999340|188999545 hsa-miR-4691-5p 1 0 0
chr2:188999340|188999545 hsa-miR-7157-5p 0 1 0
chr2:188999340|188999545 hsa-miR-570-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:188999340|188999545
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MHFLNLGEWNAVELPFLLRDQGDQLHL
Nucleotide Sequence ATGCATTTTTTAAACCTAGGTGAATGGAATGCTGTGGAGTTACCTTTCCTCCTTCGGGACCAGGGGGACCAGCTCCACCTCTAA
CircID chr2:188999340|188999545
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MIIYYFSLIFRVLLVLLGHLVLLVLLVCKECLEKEE
Nucleotide Sequence CTGATCATTTATTATTTCTCACTTATTTTCAGGGTGCTGCTGGTCCTCCTGGGCCACCTGGTGCTGCTGGTACTCCTGGTCTGCAAGGAATGCCTGGAGAAAGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab