CircRNA Information

General Information
circRNA Basic Information
CircID chr2:189001536|189003009
Strand +
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence CTTTCTCACCCGGAGCCCCTCTTTCTCCTTTACCACCAGGTTCACCATTCTGTCCAGGAGCACCAGGGAAACCAGCAGGTCCTGGAGGGCCAGTTTCACCTCTCTCACCAGGGCTACCACGAGGTCCAGCTATACCTGGAAGTCCGGGGGCACCACCTTCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:189001536|189003009 hsa-miR-370-5p 0 0 1
chr2:189001536|189003009 hsa-miR-370-3p 0 0 1
chr2:189001536|189003009 hsa-miR-328-5p 0 0 1
chr2:189001536|189003009 hsa-miR-328-3p 0 0 1
chr2:189001536|189003009 hsa-miR-492 0 0 1
chr2:189001536|189003009 hsa-miR-493-5p 0 0 1
chr2:189001536|189003009 hsa-miR-493-3p 0 0 1
chr2:189001536|189003009 hsa-miR-193b-5p 0 0 1
chr2:189001536|189003009 hsa-miR-193b-3p 0 0 1
chr2:189001536|189003009 hsa-miR-539-5p 0 0 1
chr2:189001536|189003009 hsa-miR-539-3p 0 0 1
chr2:189001536|189003009 hsa-miR-583 0 0 1
chr2:189001536|189003009 hsa-miR-617 0 0 1
chr2:189001536|189003009 hsa-miR-665 0 0 1
chr2:189001536|189003009 hsa-miR-1291 0 0 1
chr2:189001536|189003009 hsa-miR-490-3p 0 0 1
chr2:189001536|189003009 hsa-miR-423-5p 0 0 1
chr2:189001536|189003009 hsa-miR-876-3p 0 0 1
chr2:189001536|189003009 hsa-miR-193a-3p 0 0 1
chr2:189001536|189003009 hsa-miR-1274a 0 0 1
chr2:189001536|189003009 hsa-miR-323-5p 0 0 1
chr2:189001536|189003009 hsa-miR-138 0 0 1
chr2:189001536|189003009 hsa-miR-129-3p 0 0 1
chr2:189001536|189003009 hsa-miR-661 1 0 0
chr2:189001536|189003009 hsa-miR-663a 1 0 0
chr2:189001536|189003009 hsa-miR-663b 1 0 0
chr2:189001536|189003009 hsa-miR-1538 1 0 0
chr2:189001536|189003009 hsa-miR-3132 1 0 0
chr2:189001536|189003009 hsa-miR-3138 1 0 0
chr2:189001536|189003009 hsa-miR-1193 1 0 0
chr2:189001536|189003009 hsa-miR-4298 1 0 0
chr2:189001536|189003009 hsa-miR-3907 1 0 0
chr2:189001536|189003009 hsa-miR-4516 1 0 0
chr2:189001536|189003009 hsa-miR-4535 1 0 0
chr2:189001536|189003009 hsa-miR-4540 1 0 0
chr2:189001536|189003009 hsa-miR-4660 1 0 0
chr2:189001536|189003009 hsa-miR-4686 1 0 0
chr2:189001536|189003009 hsa-miR-4689 1 0 0
chr2:189001536|189003009 hsa-miR-4710 1 0 0
chr2:189001536|189003009 hsa-miR-4739 1 0 0
chr2:189001536|189003009 hsa-miR-5090 1 0 0
chr2:189001536|189003009 hsa-miR-5739 1 0 0
chr2:189001536|189003009 hsa-miR-6124 1 0 0
chr2:189001536|189003009 hsa-miR-6860 1 0 0
chr2:189001536|189003009 hsa-miR-671-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6854-5p 1 0 0
chr2:189001536|189003009 hsa-miR-8071 1 0 0
chr2:189001536|189003009 hsa-miR-6746-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6730-5p 1 0 0
chr2:189001536|189003009 hsa-miR-197-5p 1 0 0
chr2:189001536|189003009 hsa-miR-874-3p 1 0 0
chr2:189001536|189003009 hsa-miR-6821-5p 1 0 0
chr2:189001536|189003009 hsa-miR-615-5p 1 0 0
chr2:189001536|189003009 hsa-miR-185-5p 1 0 0
chr2:189001536|189003009 hsa-miR-3677-3p 1 0 0
chr2:189001536|189003009 hsa-miR-877-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6877-5p 1 0 0
chr2:189001536|189003009 hsa-miR-4800-5p 1 0 0
chr2:189001536|189003009 hsa-miR-5196-5p 1 0 0
chr2:189001536|189003009 hsa-miR-10396b-5p 1 0 0
chr2:189001536|189003009 hsa-miR-10526-3p 1 0 0
chr2:189001536|189003009 hsa-miR-1909-3p 1 0 0
chr2:189001536|189003009 hsa-miR-4745-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6735-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6794-5p 1 0 0
chr2:189001536|189003009 hsa-miR-3187-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6831-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6891-5p 1 0 0
chr2:189001536|189003009 hsa-miR-6791-5p 1 0 0
chr2:189001536|189003009 hsa-miR-323b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:189001536|189003009
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MEGQFHLSHQGYHEVQLYLEVRGHHLH
Nucleotide Sequence CTGGAGGGCCAGTTTCACCTCTCTCACCAGGGCTACCACGAGGTCCAGCTATACCTGGAAGTCCGGGGGCACCACCTTCAC
CircID chr2:189001536|189003009
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MSRSTRETSRSWRASFTSLTRATTRSSYTWKSGGTTFT
Nucleotide Sequence CTGTCCAGGAGCACCAGGGAAACCAGCAGGTCCTGGAGGGCCAGTTTCACCTCTCTCACCAGGGCTACCACGAGGTCCAGCTATACCTGGAAGTCCGGGGGCACCACCTTCACC
CircID chr2:189001536|189003009
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MDLVVALVREVKLALQDLLVSLVLLDRMVNLVVKEKEGLRVRK
Nucleotide Sequence CTGGACCTCGTGGTAGCCCTGGTGAGAGAGGTGAAACTGGCCCTCCAGGACCTGCTGGTTTCCCTGGTGCTCCTGGACAGAATGGTGAACCTGGTGGTAAAGGAGAAAGAGGGGCTCCGGGTGAGAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab