CircRNA Information

General Information
circRNA Basic Information
CircID chr2:189002971|189003776
Strand -
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence CTGGTGGGTGCTGCTGGCTTCCCTGGTGCTCGTGGTCTTCCTGGTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:189002971|189003776 hsa-miR-15a-5p 0 0 1
chr2:189002971|189003776 hsa-miR-15a-3p 0 0 1
chr2:189002971|189003776 hsa-miR-29a-5p 0 0 1
chr2:189002971|189003776 hsa-miR-29a-3p 0 0 1
chr2:189002971|189003776 hsa-miR-33a-5p 0 0 1
chr2:189002971|189003776 hsa-miR-33a-3p 0 0 1
chr2:189002971|189003776 hsa-miR-198 0 0 1
chr2:189002971|189003776 hsa-miR-10a-5p 0 0 1
chr2:189002971|189003776 hsa-miR-10a-3p 0 0 1
chr2:189002971|189003776 hsa-miR-10b-5p 0 0 1
chr2:189002971|189003776 hsa-miR-10b-3p 0 0 1
chr2:189002971|189003776 hsa-miR-181c-5p 0 0 1
chr2:189002971|189003776 hsa-miR-181c-3p 0 0 1
chr2:189002971|189003776 hsa-miR-205-5p 0 0 1
chr2:189002971|189003776 hsa-miR-205-3p 0 0 1
chr2:189002971|189003776 hsa-miR-214-5p 0 0 1
chr2:189002971|189003776 hsa-miR-214-3p 0 0 1
chr2:189002971|189003776 hsa-miR-15b-5p 0 0 1
chr2:189002971|189003776 hsa-miR-15b-3p 0 0 1
chr2:189002971|189003776 hsa-miR-195-5p 0 0 1
chr2:189002971|189003776 hsa-miR-195-3p 0 0 1
chr2:189002971|189003776 hsa-miR-155-5p 0 0 1
chr2:189002971|189003776 hsa-miR-155-3p 0 0 1
chr2:189002971|189003776 hsa-miR-29c-5p 0 0 1
chr2:189002971|189003776 hsa-miR-29c-3p 0 0 1
chr2:189002971|189003776 hsa-miR-424-5p 0 0 1
chr2:189002971|189003776 hsa-miR-424-3p 0 0 1
chr2:189002971|189003776 hsa-miR-412-5p 0 0 1
chr2:189002971|189003776 hsa-miR-412-3p 0 0 1
chr2:189002971|189003776 hsa-miR-410-5p 0 0 1
chr2:189002971|189003776 hsa-miR-410-3p 0 0 1
chr2:189002971|189003776 hsa-miR-495-5p 0 0 1
chr2:189002971|189003776 hsa-miR-495-3p 0 0 1
chr2:189002971|189003776 hsa-miR-497-5p 0 0 1
chr2:189002971|189003776 hsa-miR-497-3p 0 0 1
chr2:189002971|189003776 hsa-miR-181d-5p 0 0 1
chr2:189002971|189003776 hsa-miR-181d-3p 0 0 1
chr2:189002971|189003776 hsa-miR-522-5p 0 0 1
chr2:189002971|189003776 hsa-miR-522-3p 0 0 1
chr2:189002971|189003776 hsa-miR-552-5p 0 0 1
chr2:189002971|189003776 hsa-miR-552-3p 0 0 1
chr2:189002971|189003776 hsa-miR-584-5p 0 0 1
chr2:189002971|189003776 hsa-miR-584-3p 0 0 1
chr2:189002971|189003776 hsa-miR-599 0 0 1
chr2:189002971|189003776 hsa-miR-600 0 0 1
chr2:189002971|189003776 hsa-miR-607 0 0 1
chr2:189002971|189003776 hsa-miR-33b-5p 0 0 1
chr2:189002971|189003776 hsa-miR-33b-3p 0 0 1
chr2:189002971|189003776 hsa-miR-633 0 0 1
chr2:189002971|189003776 hsa-miR-634 0 0 1
chr2:189002971|189003776 hsa-miR-1301-5p 0 0 1
chr2:189002971|189003776 hsa-miR-1301-3p 0 0 1
chr2:189002971|189003776 hsa-miR-891b 0 0 1
chr2:189002971|189003776 hsa-miR-665 0 1 1
chr2:189002971|189003776 hsa-miR-1229-5p 0 0 1
chr2:189002971|189003776 hsa-miR-1229-3p 0 0 1
chr2:189002971|189003776 hsa-miR-1203 0 0 1
chr2:189002971|189003776 hsa-miR-548l 0 0 1
chr2:189002971|189003776 hsa-miR-1305 0 0 1
chr2:189002971|189003776 hsa-miR-548n 0 0 1
chr2:189002971|189003776 hsa-miR-1288-5p 0 0 1
chr2:189002971|189003776 hsa-miR-1288-3p 0 0 1
chr2:189002971|189003776 hsa-miR-671-5p 0 0 1
chr2:189002971|189003776 hsa-miR-1225-3p 1 1 1
chr2:189002971|189003776 hsa-miR-615-5p 0 1 1
chr2:189002971|189003776 hsa-miR-508-5p 1 1 1
chr2:189002971|189003776 hsa-miR-105 0 0 1
chr2:189002971|189003776 hsa-miR-371-5p 0 0 1
chr2:189002971|189003776 hsa-miR-16 0 0 1
chr2:189002971|189003776 hsa-miR-7 0 0 1
chr2:189002971|189003776 hsa-miR-644 0 0 1
chr2:189002971|189003776 hsa-miR-181a 0 0 1
chr2:189002971|189003776 hsa-miR-181b 0 0 1
chr2:189002971|189003776 hsa-miR-514 0 0 1
chr2:189002971|189003776 hsa-miR-203 0 0 1
chr2:189002971|189003776 hsa-miR-147 0 0 1
chr2:189002971|189003776 hsa-miR-29b 0 0 1
chr2:189002971|189003776 hsa-miR-107 1 0 0
chr2:189002971|189003776 hsa-miR-586 0 1 0
chr2:189002971|189003776 hsa-miR-761 0 1 0
chr2:189002971|189003776 hsa-miR-4512 1 1 0
chr2:189002971|189003776 hsa-miR-4530 0 1 0
chr2:189002971|189003776 hsa-miR-4751 0 1 0
chr2:189002971|189003776 hsa-miR-9900 0 1 0
chr2:189002971|189003776 hsa-miR-12126 0 1 0
chr2:189002971|189003776 hsa-miR-6881-3p 0 1 0
chr2:189002971|189003776 hsa-miR-3663-3p 1 1 0
chr2:189002971|189003776 hsa-miR-4722-5p 1 0 0
chr2:189002971|189003776 hsa-miR-7154-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6832-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6798-5p 0 1 0
chr2:189002971|189003776 hsa-miR-6810-5p 1 1 0
chr2:189002971|189003776 hsa-miR-6858-3p 0 1 0
chr2:189002971|189003776 hsa-miR-4786-3p 0 1 0
chr2:189002971|189003776 hsa-miR-4640-5p 1 0 0
chr2:189002971|189003776 hsa-miR-6753-5p 0 1 0
chr2:189002971|189003776 hsa-miR-103a-3p 1 0 0
chr2:189002971|189003776 hsa-miR-6828-5p 0 1 0
chr2:189002971|189003776 hsa-miR-6769a-3p 0 1 0
chr2:189002971|189003776 hsa-miR-1184 1 0 0
chr2:189002971|189003776 hsa-miR-4776-5p 1 0 0
chr2:189002971|189003776 hsa-miR-3189-3p 0 1 0
chr2:189002971|189003776 hsa-miR-208a-5p 0 1 0
chr2:189002971|189003776 hsa-miR-6826-3p 0 1 0
chr2:189002971|189003776 hsa-miR-7113-5p 0 1 0
chr2:189002971|189003776 hsa-miR-130b-5p 0 1 0
chr2:189002971|189003776 hsa-miR-3680-3p 0 1 0
chr2:189002971|189003776 hsa-miR-29b-3p 0 1 0
chr2:189002971|189003776 hsa-miR-5002-3p 0 1 0
chr2:189002971|189003776 hsa-miR-16-5p 0 1 0
chr2:189002971|189003776 hsa-miR-6503-3p 1 0 0
chr2:189002971|189003776 hsa-miR-514a-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6754-3p 0 1 0
chr2:189002971|189003776 hsa-miR-328-5p 1 0 0
chr2:189002971|189003776 hsa-miR-4726-5p 1 0 0
chr2:189002971|189003776 hsa-miR-6791-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6762-5p 0 1 0
chr2:189002971|189003776 hsa-miR-6862-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6751-3p 0 1 0
chr2:189002971|189003776 hsa-miR-6823-3p 0 1 0
chr2:189002971|189003776 hsa-miR-519c-3p 0 1 0
chr2:189002971|189003776 hsa-miR-514b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:189002971|189003776
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence LVVKEKEGLRVRKVKEALLELQDPLEVLDLLVLLVPKVSKVNVAVLVDL
Nucleotide Sequence CTGGTGGTAAAGGAGAAAGAGGGGCTCCGGGTGAGAAAGGTGAAGGAGGCCCTCCTGGAGTTGCAGGACCCCCTGGAGGTTCTGGACCTGCTGGTCCTCCTGGTCCCCAAGGTGTCAAAGGTGAACGTGGCAGTCCTGGTGGACCTGTAA
CircID chr2:189002971|189003776
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MTFRYNADHATHYTFCLLYSYLFYF
Nucleotide Sequence ATGACTTTCAGGTACAATGCAGATCATGCCACACATTATACTTTTTGTTTGTTGTACAGTTATTTGTTCTACTTTTGA
CircID chr2:189002971|189003776
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MQIMPHIILFVCCTVICSTFEIQKYITISQGAAGFPGARGLPGP
Nucleotide Sequence ATGCAGATCATGCCACACATTATACTTTTTGTTTGTTGTACAGTTATTTGTTCTACTTTTGAAATTCAAAAATATATTACCATTTCACAGGGTGCTGCTGGCTTCCCTGGTGCTCGTGGTCTTCCTGGTCCT
CircID chr2:189002971|189003776
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MFVVQLFVLLLKFKNILPFHRVLLASLVLVVFLVL
Nucleotide Sequence TTGTTTGTTGTACAGTTATTTGTTCTACTTTTGAAATTCAAAAATATATTACCATTTCACAGGGTGCTGCTGGCTTCCCTGGTGCTCGTGGTCTTCCTGGTCCTC
CircID chr2:189002971|189003776
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MYLKVIYGLCFPLEFTYNSCMNERLQFLHSLYGTSVSNAAFIQVDIN
Nucleotide Sequence TTGTACCTGAAAGTCATTTATGGTTTGTGTTTCCCCTTGGAATTTACATATAACTCATGTATGAATGAGCGATTACAATTTTTACATTCTCTTTATGGAACTAGTGTCTCAAATGCAGCTTTTATACAGGTTGATATCAATTAA
CircID chr2:189002971|189003776
ORF Type ORF6
Protein Length 36
Nucleotide Length 108
Protein Sequence MGTRRTSRSRTSRGSCNSRRASFTFLTRSPSFSFTT
Nucleotide Sequence TTGGGGACCAGGAGGACCAGCAGGTCCAGAACCTCCAGGGGGTCCTGCAACTCCAGGAGGGCCTCCTTCACCTTTCTCACCCGGAGCCCCTCTTTCTCCTTTACCACC
CircID chr2:189002971|189003776
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MNFKSRTNNCTTNKKYNVWHDLHCT
Nucleotide Sequence TTGAATTTCAAAAGTAGAACAAATAACTGTACAACAAACAAAAAGTATAATGTGTGGCATGATCTGCATTGTACCTGA
CircID chr2:189002971|189003776
ORF Type ORF8
Protein Length 30
Nucleotide Length 93
Protein Sequence MSDYNFYILFMELVSQMQLLYRLISINAFQ
Nucleotide Sequence ATGAGCGATTACAATTTTTACATTCTCTTTATGGAACTAGTGTCTCAAATGCAGCTTTTATACAGGTTGATATCAATTAATGCTTTTCAATAA
CircID chr2:189002971|189003776
ORF Type ORF9
Protein Length 44
Nucleotide Length 132
Protein Sequence MPRSPLTPWGPGGPAGPEPPGGPATPGGPPSPFSPGAPLSPLPP
Nucleotide Sequence CTGCCACGTTCACCTTTGACACCTTGGGGACCAGGAGGACCAGCAGGTCCAGAACCTCCAGGGGGTCCTGCAACTCCAGGAGGGCCTCCTTCACCTTTCTCACCCGGAGCCCCTCTTTCTCCTTTACCACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab