CircRNA Information

General Information
circRNA Basic Information
CircID chr2:189004001|189004329
Strand +
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence CTGGCATGCCTGGTGGTCCTGCAAGACCCCGTGCTCCAGTGATCCCAGCAATCCCAAGTGGGCCTGGAGCTCCCTAATACAGATAATGAAGACTTAGCTCATCTTTATGTGACAGTGTTTTTCTCTAATCGATTTGTGATAAAAATCAAAATAGTAGAATCAATTTAAAAAAATGAAGTTACTTACTGGTGGGCCCTGGGCACCAGGCGATCCCTTCTCTCCTGGTTGGCCAGCATCACCTTTTGGTCCAGACACTCCAGGGCTGCCAGGAGCACCAGTGTTACCCGCAGGACCTGGGGGCCCATCCTTGCCTGGAGAACCGCTGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:189004001|189004329 hsa-miR-122-5p 0 0 1
chr2:189004001|189004329 hsa-miR-122-3p 0 0 1
chr2:189004001|189004329 hsa-miR-141-5p 0 0 1
chr2:189004001|189004329 hsa-miR-141-3p 0 0 1
chr2:189004001|189004329 hsa-miR-185-5p 0 0 1
chr2:189004001|189004329 hsa-miR-185-3p 0 0 1
chr2:189004001|189004329 hsa-miR-200a-5p 0 0 1
chr2:189004001|189004329 hsa-miR-200a-3p 0 0 1
chr2:189004001|189004329 hsa-miR-422a 0 0 1
chr2:189004001|189004329 hsa-miR-431-5p 0 0 1
chr2:189004001|189004329 hsa-miR-431-3p 0 0 1
chr2:189004001|189004329 hsa-miR-579-5p 0 0 1
chr2:189004001|189004329 hsa-miR-579-3p 0 0 1
chr2:189004001|189004329 hsa-miR-610 0 0 1
chr2:189004001|189004329 hsa-miR-638 1 1 1
chr2:189004001|189004329 hsa-miR-1264 0 0 1
chr2:189004001|189004329 hsa-miR-766-5p 0 0 1
chr2:189004001|189004329 hsa-miR-766-3p 0 0 1
chr2:189004001|189004329 hsa-miR-665 0 0 1
chr2:189004001|189004329 hsa-miR-920 0 0 1
chr2:189004001|189004329 hsa-miR-1231 0 1 1
chr2:189004001|189004329 hsa-miR-1286 0 1 1
chr2:189004001|189004329 hsa-miR-1303 0 0 1
chr2:189004001|189004329 hsa-miR-1321 0 0 1
chr2:189004001|189004329 hsa-miR-296-5p 0 0 1
chr2:189004001|189004329 hsa-miR-885-3p 0 0 1
chr2:189004001|189004329 hsa-miR-193a-5p 0 1 1
chr2:189004001|189004329 hsa-miR-361-3p 0 1 1
chr2:189004001|189004329 hsa-miR-556-5p 0 0 1
chr2:189004001|189004329 hsa-miR-769-3p 1 1 1
chr2:189004001|189004329 hsa-miR-450b-3p 0 1 1
chr2:189004001|189004329 hsa-miR-515-5p 0 0 1
chr2:189004001|189004329 hsa-miR-378 0 0 1
chr2:189004001|189004329 hsa-miR-886-3p 0 0 1
chr2:189004001|189004329 hsa-miR-548q 0 1 0
chr2:189004001|189004329 hsa-miR-3147 1 0 0
chr2:189004001|189004329 hsa-miR-3154 0 1 0
chr2:189004001|189004329 hsa-miR-4300 0 1 0
chr2:189004001|189004329 hsa-miR-4308 0 1 0
chr2:189004001|189004329 hsa-miR-4254 0 1 0
chr2:189004001|189004329 hsa-miR-3907 1 1 0
chr2:189004001|189004329 hsa-miR-4425 1 0 0
chr2:189004001|189004329 hsa-miR-4669 1 0 0
chr2:189004001|189004329 hsa-miR-4673 0 1 0
chr2:189004001|189004329 hsa-miR-6088 1 0 0
chr2:189004001|189004329 hsa-miR-8073 1 1 0
chr2:189004001|189004329 hsa-miR-134-5p 1 0 0
chr2:189004001|189004329 hsa-miR-7155-5p 0 1 0
chr2:189004001|189004329 hsa-miR-4726-3p 0 1 0
chr2:189004001|189004329 hsa-miR-671-5p 1 1 0
chr2:189004001|189004329 hsa-miR-6757-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6746-5p 1 1 0
chr2:189004001|189004329 hsa-miR-4722-5p 1 0 0
chr2:189004001|189004329 hsa-miR-6770-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6757-3p 0 1 0
chr2:189004001|189004329 hsa-miR-4638-3p 1 0 0
chr2:189004001|189004329 hsa-miR-6824-5p 1 0 0
chr2:189004001|189004329 hsa-miR-4776-5p 0 1 0
chr2:189004001|189004329 hsa-miR-3190-5p 0 1 0
chr2:189004001|189004329 hsa-miR-4707-5p 1 0 0
chr2:189004001|189004329 hsa-miR-1911-3p 0 1 0
chr2:189004001|189004329 hsa-miR-6513-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6868-5p 0 1 0
chr2:189004001|189004329 hsa-miR-653-3p 0 1 0
chr2:189004001|189004329 hsa-miR-5189-3p 0 1 0
chr2:189004001|189004329 hsa-miR-4763-3p 1 0 0
chr2:189004001|189004329 hsa-miR-1343-5p 1 0 0
chr2:189004001|189004329 hsa-miR-6726-5p 1 1 0
chr2:189004001|189004329 hsa-miR-6797-5p 1 0 0
chr2:189004001|189004329 hsa-miR-6836-5p 1 0 0
chr2:189004001|189004329 hsa-miR-4649-5p 0 1 0
chr2:189004001|189004329 hsa-miR-4685-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6848-5p 1 0 0
chr2:189004001|189004329 hsa-miR-939-5p 1 0 0
chr2:189004001|189004329 hsa-miR-6773-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6724-5p 1 1 0
chr2:189004001|189004329 hsa-miR-10400-3p 1 0 0
chr2:189004001|189004329 hsa-miR-6837-5p 0 1 0
chr2:189004001|189004329 hsa-miR-619-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6764-5p 0 1 0
chr2:189004001|189004329 hsa-miR-383-5p 0 1 0
chr2:189004001|189004329 hsa-miR-6506-5p 0 1 0
chr2:189004001|189004329 hsa-miR-200c-3p 0 1 0
chr2:189004001|189004329 hsa-miR-4645-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:189004001|189004329
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MELPNTDNEDLAHLYVTVFFSNRFVIKIKIVESI
Nucleotide Sequence CTGGAGCTCCCTAATACAGATAATGAAGACTTAGCTCATCTTTATGTGACAGTGTTTTTCTCTAATCGATTTGTGATAAAAATCAAAATAGTAGAATCAATTTAA
CircID chr2:189004001|189004329
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MGTRRSLLSWLASITFWSRHSRAARSTSVTRRTWGPILAWRTAG
Nucleotide Sequence CTGGGCACCAGGCGATCCCTTCTCTCCTGGTTGGCCAGCATCACCTTTTGGTCCAGACACTCCAGGGCTGCCAGGAGCACCAGTGTTACCCGCAGGACCTGGGGGCCCATCCTTGCCTGGAGAACCGCTGGG
CircID chr2:189004001|189004329
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MKLLTGGPWAPGDPFSPGWPASPFGPDTPGLPGAPVLPAGPGGPSLPGEPLG
Nucleotide Sequence ATGAAGTTACTTACTGGTGGGCCCTGGGCACCAGGCGATCCCTTCTCTCCTGGTTGGCCAGCATCACCTTTTGGTCCAGACACTCCAGGGCTGCCAGGAGCACCAGTGTTACCCGCAGGACCTGGGGGCCCATCCTTGCCTGGAGAACCGCTGGGA
CircID chr2:189004001|189004329
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MVGPGHQAIPSLLVGQHHLLVQTLQGCQEHQCYPQDLGAHPCLENRWD
Nucleotide Sequence CTGGTGGGCCCTGGGCACCAGGCGATCCCTTCTCTCCTGGTTGGCCAGCATCACCTTTTGGTCCAGACACTCCAGGGCTGCCAGGAGCACCAGTGTTACCCGCAGGACCTGGGGGCCCATCCTTGCCTGGAGAACCGCTGGGAC
CircID chr2:189004001|189004329
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MGPQVLRVTLVLLAALECLDQKVMLANQERRDRLVPRAHQ
Nucleotide Sequence ATGGGCCCCCAGGTCCTGCGGGTAACACTGGTGCTCCTGGCAGCCCTGGAGTGTCTGGACCAAAAGGTGATGCTGGCCAACCAGGAGAGAAGGGATCGCCTGGTGCCCAGGGCCCACCAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab