CircRNA Information

General Information
circRNA Basic Information
CircID chr2:189009187|189010298
Strand +
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence CAGTGTTTCCGTGGAACATTCAAAGGATTGGCACTTATGCATGTTTCCCCAGTTTCCATATTACAGAATACCTTGATAGCATCCAATTTGCATCCTTGGTTAGGGTCAACCCAGTATTCTCCACTCTTGAGTTCAGGATGGCAGAATTTCAGGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:189009187|189010298 hsa-miR-200b-5p 0 0 1
chr2:189009187|189010298 hsa-miR-200b-3p 0 0 1
chr2:189009187|189010298 hsa-miR-141-5p 0 0 1
chr2:189009187|189010298 hsa-miR-141-3p 0 0 1
chr2:189009187|189010298 hsa-miR-200c-5p 0 0 1
chr2:189009187|189010298 hsa-miR-200c-3p 0 0 1
chr2:189009187|189010298 hsa-miR-200a-5p 0 0 1
chr2:189009187|189010298 hsa-miR-200a-3p 0 0 1
chr2:189009187|189010298 hsa-miR-302a-5p 0 0 1
chr2:189009187|189010298 hsa-miR-302a-3p 0 0 1
chr2:189009187|189010298 hsa-miR-302b-5p 0 0 1
chr2:189009187|189010298 hsa-miR-302b-3p 0 0 1
chr2:189009187|189010298 hsa-miR-302c-5p 0 0 1
chr2:189009187|189010298 hsa-miR-302c-3p 0 0 1
chr2:189009187|189010298 hsa-miR-302d-5p 0 0 1
chr2:189009187|189010298 hsa-miR-302d-3p 0 0 1
chr2:189009187|189010298 hsa-miR-372-5p 0 0 1
chr2:189009187|189010298 hsa-miR-372-3p 0 0 1
chr2:189009187|189010298 hsa-miR-373-5p 0 0 1
chr2:189009187|189010298 hsa-miR-373-3p 0 0 1
chr2:189009187|189010298 hsa-miR-335-5p 0 0 1
chr2:189009187|189010298 hsa-miR-335-3p 0 0 1
chr2:189009187|189010298 hsa-miR-429 0 0 1
chr2:189009187|189010298 hsa-miR-494-5p 0 0 1
chr2:189009187|189010298 hsa-miR-494-3p 0 0 1
chr2:189009187|189010298 hsa-miR-520e-5p 0 0 1
chr2:189009187|189010298 hsa-miR-520e-3p 0 0 1
chr2:189009187|189010298 hsa-miR-520b-5p 0 0 1
chr2:189009187|189010298 hsa-miR-520b-3p 0 0 1
chr2:189009187|189010298 hsa-miR-504-5p 0 0 1
chr2:189009187|189010298 hsa-miR-504-3p 0 0 1
chr2:189009187|189010298 hsa-miR-563 0 0 1
chr2:189009187|189010298 hsa-miR-630 0 0 1
chr2:189009187|189010298 hsa-miR-302e 0 0 1
chr2:189009187|189010298 hsa-miR-501-5p 0 0 1
chr2:189009187|189010298 hsa-miR-520d-3p 0 0 1
chr2:189009187|189010298 hsa-miR-519b-3p 0 0 1
chr2:189009187|189010298 hsa-miR-519c-3p 0 0 1
chr2:189009187|189010298 hsa-miR-520a-3p 0 0 1
chr2:189009187|189010298 hsa-miR-520c-3p 0 0 1
chr2:189009187|189010298 hsa-miR-500 0 0 1
chr2:189009187|189010298 hsa-miR-519a 0 0 1
chr2:189009187|189010298 hsa-miR-2110 1 0 0
chr2:189009187|189010298 hsa-miR-4428 1 0 0
chr2:189009187|189010298 hsa-miR-4689 1 0 0
chr2:189009187|189010298 hsa-miR-4731-5p 1 0 0
chr2:189009187|189010298 hsa-miR-6857-5p 1 0 0
chr2:189009187|189010298 hsa-miR-6741-5p 1 0 0
chr2:189009187|189010298 hsa-miR-6783-5p 1 0 0
chr2:189009187|189010298 hsa-miR-4715-5p 1 0 0
chr2:189009187|189010298 hsa-miR-371a-3p 1 0 0
chr2:189009187|189010298 hsa-miR-20b-3p 1 0 0
chr2:189009187|189010298 hsa-miR-4725-3p 1 0 0
chr2:189009187|189010298 hsa-miR-4665-5p 1 0 0
chr2:189009187|189010298 hsa-miR-137-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:189009187|189010298
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MALMHVSPVSILQNTLIASNLHPWLGSTQYSPLLSSGWQNFRS
Nucleotide Sequence TTGGCACTTATGCATGTTTCCCCAGTTTCCATATTACAGAATACCTTGATAGCATCCAATTTGCATCCTTGGTTAGGGTCAACCCAGTATTCTCCACTCTTGAGTTCAGGATGGCAGAATTTCAGGTCT
CircID chr2:189009187|189010298
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISANPLNVPRKH
Nucleotide Sequence CTGAAATTCTGCCATCCTGAACTCAAGAGTGGAGAATACTGGGTTGACCCTAACCAAGGATGCAAATTGGATGCTATCAAGGTATTCTGTAATATGGAAACTGGGGAAACATGCATAAGTGCCAATCCTTTGAATGTTCCACGGAAACAC
CircID chr2:189009187|189010298
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MNSRVENTGLTLTKDANWMLSRYSVIWKLGKHA
Nucleotide Sequence CTGAACTCAAGAGTGGAGAATACTGGGTTGACCCTAACCAAGGATGCAAATTGGATGCTATCAAGGTATTCTGTAATATGGAAACTGGGGAAACATGCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab