CircRNA Information

General Information
circRNA Basic Information
CircID chr2:189010847|189011759
Strand +
CircType exon
Host Gene ENSG00000168542.11;
Algorism CIRI2;
Sequence AGGGCCAACGTCCACACCAAATTCTTGATCAGGACCACCAATGTCATAGGGTGCAATATCTACAATAGGTAGTCTCACAGCCTTGCGTGTTCGATATTCAAAGACTGTTTTGCTCCATTCCCCAGTGTGTTTCGTGCAACCATCCTCCAGAACTGTGTAGGTGAATTTGCTATTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:189010847|189011759 hsa-miR-25-5p 0 0 1
chr2:189010847|189011759 hsa-miR-25-3p 0 0 1
chr2:189010847|189011759 hsa-miR-32-5p 0 0 1
chr2:189010847|189011759 hsa-miR-32-3p 0 0 1
chr2:189010847|189011759 hsa-miR-212-5p 0 0 1
chr2:189010847|189011759 hsa-miR-212-3p 0 0 1
chr2:189010847|189011759 hsa-miR-132-5p 0 0 1
chr2:189010847|189011759 hsa-miR-132-3p 0 0 1
chr2:189010847|189011759 hsa-miR-363-5p 0 0 1
chr2:189010847|189011759 hsa-miR-363-3p 0 0 1
chr2:189010847|189011759 hsa-miR-367-5p 0 0 1
chr2:189010847|189011759 hsa-miR-367-3p 0 0 1
chr2:189010847|189011759 hsa-miR-328-5p 0 0 1
chr2:189010847|189011759 hsa-miR-328-3p 0 0 1
chr2:189010847|189011759 hsa-miR-425-5p 0 0 1
chr2:189010847|189011759 hsa-miR-425-3p 0 0 1
chr2:189010847|189011759 hsa-miR-92b-5p 0 0 1
chr2:189010847|189011759 hsa-miR-92b-3p 0 0 1
chr2:189010847|189011759 hsa-miR-603 0 0 1
chr2:189010847|189011759 hsa-miR-765 0 0 1
chr2:189010847|189011759 hsa-miR-1291 0 0 1
chr2:189010847|189011759 hsa-miR-1299 0 0 1
chr2:189010847|189011759 hsa-miR-548p 0 0 1
chr2:189010847|189011759 hsa-miR-1306-5p 0 0 1
chr2:189010847|189011759 hsa-miR-1306-3p 0 0 1
chr2:189010847|189011759 hsa-miR-876-3p 0 0 1
chr2:189010847|189011759 hsa-miR-323-5p 0 0 1
chr2:189010847|189011759 hsa-miR-516b 0 0 1
chr2:189010847|189011759 hsa-miR-92a 0 0 1
chr2:189010847|189011759 hsa-miR-1193 0 1 0
chr2:189010847|189011759 hsa-miR-4260 1 0 0
chr2:189010847|189011759 hsa-miR-3911 0 1 0
chr2:189010847|189011759 hsa-miR-3935 0 1 0
chr2:189010847|189011759 hsa-miR-4463 1 0 0
chr2:189010847|189011759 hsa-miR-2392 0 1 0
chr2:189010847|189011759 hsa-miR-4525 1 0 0
chr2:189010847|189011759 hsa-miR-4660 1 0 0
chr2:189010847|189011759 hsa-miR-4672 0 1 0
chr2:189010847|189011759 hsa-miR-5698 1 0 0
chr2:189010847|189011759 hsa-miR-6081 1 0 0
chr2:189010847|189011759 hsa-miR-6132 1 0 0
chr2:189010847|189011759 hsa-miR-7974 1 1 0
chr2:189010847|189011759 hsa-miR-8089 1 1 0
chr2:189010847|189011759 hsa-miR-12119 1 0 0
chr2:189010847|189011759 hsa-miR-323a-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6747-5p 1 0 0
chr2:189010847|189011759 hsa-miR-3150a-3p 1 0 0
chr2:189010847|189011759 hsa-miR-6894-5p 1 1 0
chr2:189010847|189011759 hsa-miR-6857-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6515-5p 1 0 0
chr2:189010847|189011759 hsa-miR-7847-3p 1 0 0
chr2:189010847|189011759 hsa-miR-4655-5p 1 0 0
chr2:189010847|189011759 hsa-miR-8069 1 0 0
chr2:189010847|189011759 hsa-miR-3605-5p 1 1 0
chr2:189010847|189011759 hsa-miR-6716-5p 1 1 0
chr2:189010847|189011759 hsa-miR-6798-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6810-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6771-5p 1 0 0
chr2:189010847|189011759 hsa-miR-516b-5p 1 1 0
chr2:189010847|189011759 hsa-miR-5010-5p 1 1 0
chr2:189010847|189011759 hsa-miR-7152-3p 1 1 0
chr2:189010847|189011759 hsa-miR-4762-3p 1 1 0
chr2:189010847|189011759 hsa-miR-758-5p 0 1 0
chr2:189010847|189011759 hsa-miR-518c-5p 1 0 0
chr2:189010847|189011759 hsa-miR-3177-3p 1 0 0
chr2:189010847|189011759 hsa-miR-6763-5p 1 0 0
chr2:189010847|189011759 hsa-miR-4728-5p 1 0 0
chr2:189010847|189011759 hsa-miR-5196-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6777-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6846-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6848-5p 1 0 0
chr2:189010847|189011759 hsa-miR-6883-5p 1 0 0
chr2:189010847|189011759 hsa-miR-4665-5p 1 0 0
chr2:189010847|189011759 hsa-miR-4700-5p 1 1 0
chr2:189010847|189011759 hsa-miR-3679-5p 1 0 0
chr2:189010847|189011759 hsa-miR-4667-5p 0 1 0
chr2:189010847|189011759 hsa-miR-6791-5p 1 0 0
chr2:189010847|189011759 hsa-miR-323b-5p 1 0 0
chr2:189010847|189011759 hsa-miR-376b-5p 0 1 0
chr2:189010847|189011759 hsa-miR-376c-5p 0 1 0
chr2:189010847|189011759 hsa-miR-494-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:189010847|189011759
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MRVRYSKTVLLHSPVCFVQPSSRTV
Nucleotide Sequence TTGCGTGTTCGATATTCAAAGACTGTTTTGCTCCATTCCCCAGTGTGTTTCGTGCAACCATCCTCCAGAACTGTGTAG
CircID chr2:189010847|189011759
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGVDVGP
Nucleotide Sequence CTGGAGGATGGTTGCACGAAACACACTGGGGAATGGAGCAAAACAGTCTTTGAATATCGAACACGCAAGGCTGTGAGACTACCTATTGTAGATATTGCACCCTATGACATTGGTGGTCCTGATCAAGAATTTGGTGTGGACGTTGGCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab