CircRNA Information

General Information
circRNA Basic Information
CircID chr2:20200971|20201151
Strand -
CircType exon
Host Gene ENSG00000115884.9;
Algorism CIRI2;
Sequence ACAGGTTCCCTTGGCTTGGTGGTGCATCTCTGATCCACAGACTGGCCCACCTCTCGGAGTGGCCAACGGAGTCGCTGAAACGTTGTCAAATAAGCAAGTAAGTGCAGGAGCCCTGGGCTGGGGGCCTCTGGCCTCTGCAGCCGGGTGGGAGGAGGATGTCCAAGGTGTCTGCGGGGTAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:20200971|20201151 hsa-miR-383-5p 0 0 1
chr2:20200971|20201151 hsa-miR-383-3p 0 0 1
chr2:20200971|20201151 hsa-miR-588 0 0 1
chr2:20200971|20201151 hsa-miR-622 0 1 1
chr2:20200971|20201151 hsa-miR-649 0 0 1
chr2:20200971|20201151 hsa-miR-541-5p 0 0 1
chr2:20200971|20201151 hsa-miR-541-3p 0 0 1
chr2:20200971|20201151 hsa-miR-1306-5p 0 0 1
chr2:20200971|20201151 hsa-miR-1306-3p 0 0 1
chr2:20200971|20201151 hsa-miR-532-3p 0 0 1
chr2:20200971|20201151 hsa-miR-767-5p 0 0 1
chr2:20200971|20201151 hsa-miR-941 0 1 1
chr2:20200971|20201151 hsa-miR-654-5p 0 0 1
chr2:20200971|20201151 hsa-miR-361-3p 0 1 1
chr2:20200971|20201151 hsa-miR-1224-3p 0 0 1
chr2:20200971|20201151 hsa-miR-502-3p 0 1 1
chr2:20200971|20201151 hsa-miR-501-3p 0 1 1
chr2:20200971|20201151 hsa-miR-220b 0 0 1
chr2:20200971|20201151 hsa-miR-1260 0 0 1
chr2:20200971|20201151 hsa-miR-1280 0 0 1
chr2:20200971|20201151 hsa-miR-514 0 0 1
chr2:20200971|20201151 hsa-miR-549 0 0 1
chr2:20200971|20201151 hsa-miR-923 0 0 1
chr2:20200971|20201151 hsa-miR-298 1 0 0
chr2:20200971|20201151 hsa-miR-1976 1 1 0
chr2:20200971|20201151 hsa-miR-4526 1 0 0
chr2:20200971|20201151 hsa-miR-4752 0 1 0
chr2:20200971|20201151 hsa-miR-5685 0 1 0
chr2:20200971|20201151 hsa-miR-5705 1 0 0
chr2:20200971|20201151 hsa-miR-6749-3p 0 1 0
chr2:20200971|20201151 hsa-miR-4665-3p 1 0 0
chr2:20200971|20201151 hsa-miR-1273h-3p 1 0 0
chr2:20200971|20201151 hsa-miR-7114-5p 0 1 0
chr2:20200971|20201151 hsa-miR-874-5p 1 0 0
chr2:20200971|20201151 hsa-miR-23b-5p 1 0 0
chr2:20200971|20201151 hsa-miR-6742-5p 1 0 0
chr2:20200971|20201151 hsa-miR-4725-5p 1 0 0
chr2:20200971|20201151 hsa-miR-4697-3p 1 0 0
chr2:20200971|20201151 hsa-miR-2467-3p 0 1 0
chr2:20200971|20201151 hsa-miR-6782-5p 1 0 0
chr2:20200971|20201151 hsa-miR-4793-3p 1 0 0
chr2:20200971|20201151 hsa-miR-6765-3p 1 0 0
chr2:20200971|20201151 hsa-miR-5008-5p 0 1 0
chr2:20200971|20201151 hsa-miR-4793-5p 1 0 0
chr2:20200971|20201151 hsa-miR-4756-3p 0 1 0
chr2:20200971|20201151 hsa-miR-5196-3p 0 1 0
chr2:20200971|20201151 hsa-miR-3158-5p 0 1 0
chr2:20200971|20201151 hsa-miR-3678-3p 0 1 0
chr2:20200971|20201151 hsa-miR-3922-5p 0 1 0
chr2:20200971|20201151 hsa-miR-4638-5p 0 1 0
chr2:20200971|20201151 hsa-miR-6813-3p 1 1 0
chr2:20200971|20201151 hsa-miR-6801-5p 0 1 0
chr2:20200971|20201151 hsa-miR-6767-5p 0 1 0
chr2:20200971|20201151 hsa-miR-3620-3p 1 0 0
chr2:20200971|20201151 hsa-miR-1909-3p 0 1 0
chr2:20200971|20201151 hsa-miR-4726-5p 0 1 0
chr2:20200971|20201151 hsa-miR-10398-3p 1 0 0
chr2:20200971|20201151 hsa-miR-10401-3p 1 0 0
chr2:20200971|20201151 hsa-miR-10400-3p 1 0 0
chr2:20200971|20201151 hsa-miR-10392-3p 1 0 0
chr2:20200971|20201151 hsa-miR-99b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:20200971|20201151
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MAWWCISDPQTGPPLGVANGVAETLSNKQVSAGALGWGPLASAAGWEEDVQGVCGVG
Nucleotide Sequence TTGGCTTGGTGGTGCATCTCTGATCCACAGACTGGCCCACCTCTCGGAGTGGCCAACGGAGTCGCTGAAACGTTGTCAAATAAGCAAGTAAGTGCAGGAGCCCTGGGCTGGGGGCCTCTGGCCTCTGCAGCCGGGTGGGAGGAGGATGTCCAAGGTGTCTGCGGGGTAGGC
CircID chr2:20200971|20201151
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MDILLPPGCRGQRPPAQGSCTYLLI
Nucleotide Sequence TTGGACATCCTCCTCCCACCCGGCTGCAGAGGCCAGAGGCCCCCAGCCCAGGGCTCCTGCACTTACTTGCTTATTTGA
CircID chr2:20200971|20201151
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MQRPEAPSPGLLHLLAYLTTFQRLRWPLREVGQSVDQRCTTKPREP
Nucleotide Sequence CTGCAGAGGCCAGAGGCCCCCAGCCCAGGGCTCCTGCACTTACTTGCTTATTTGACAACGTTTCAGCGACTCCGTTGGCCACTCCGAGAGGTGGGCCAGTCTGTGGATCAGAGATGCACCACCAAGCCAAGGGAACCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab