CircRNA Information

General Information
circRNA Basic Information
CircID chr2:20201916|20202072
Strand -
CircType exon
Host Gene ENSG00000115884.9;
Algorism CIRI2;
Sequence GACTGCTTGAAAGAGGCGGCGGCCCCACGGCAGCCTGGACTGGCCAGCCTGCCAACAGACCACCAGAAACGGGGCCACCAGACAGATAGTCCATACCCTGTTGCACACATGAGCGACAAACTCAAGAGACAACACACAAACTAAGCCTACATTTTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:20201916|20202072 hsa-miR-19a-5p 0 0 1
chr2:20201916|20202072 hsa-miR-19a-3p 0 0 1
chr2:20201916|20202072 hsa-miR-498-5p 0 0 1
chr2:20201916|20202072 hsa-miR-498-3p 0 0 1
chr2:20201916|20202072 hsa-miR-526b-5p 0 0 1
chr2:20201916|20202072 hsa-miR-526b-3p 0 0 1
chr2:20201916|20202072 hsa-miR-593-5p 0 0 1
chr2:20201916|20202072 hsa-miR-593-3p 0 0 1
chr2:20201916|20202072 hsa-miR-599 0 0 1
chr2:20201916|20202072 hsa-miR-1231 0 0 1
chr2:20201916|20202072 hsa-miR-663b 0 0 1
chr2:20201916|20202072 hsa-miR-1267 0 0 1
chr2:20201916|20202072 hsa-miR-876-3p 0 0 1
chr2:20201916|20202072 hsa-miR-1207-5p 0 0 1
chr2:20201916|20202072 hsa-miR-455-3p 0 0 1
chr2:20201916|20202072 hsa-miR-323-5p 0 0 1
chr2:20201916|20202072 hsa-miR-19b 0 0 1
chr2:20201916|20202072 hsa-miR-147 0 0 1
chr2:20201916|20202072 hsa-miR-762 1 0 0
chr2:20201916|20202072 hsa-miR-4440 0 1 0
chr2:20201916|20202072 hsa-miR-4456 0 1 0
chr2:20201916|20202072 hsa-miR-4483 0 1 0
chr2:20201916|20202072 hsa-miR-5087 0 1 0
chr2:20201916|20202072 hsa-miR-128-1-5p 0 1 0
chr2:20201916|20202072 hsa-miR-323a-5p 0 1 0
chr2:20201916|20202072 hsa-miR-27a-5p 1 0 0
chr2:20201916|20202072 hsa-miR-6818-3p 0 1 0
chr2:20201916|20202072 hsa-miR-3190-5p 0 1 0
chr2:20201916|20202072 hsa-miR-3120-5p 0 1 0
chr2:20201916|20202072 hsa-miR-6746-3p 0 1 0
chr2:20201916|20202072 hsa-miR-4763-3p 1 0 0
chr2:20201916|20202072 hsa-miR-2682-3p 0 1 0
chr2:20201916|20202072 hsa-miR-6753-3p 0 1 0
chr2:20201916|20202072 hsa-miR-6781-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:20201916|20202072
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MKEAAAPRQPGLASLPTDHQKRGHQTDSPYPVAHMSDKLKRQHTN
Nucleotide Sequence TTGAAAGAGGCGGCGGCCCCACGGCAGCCTGGACTGGCCAGCCTGCCAACAGACCACCAGAAACGGGGCCACCAGACAGATAGTCCATACCCTGTTGCACACATGAGCGACAAACTCAAGAGACAACACACAAACTAA
CircID chr2:20201916|20202072
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MDWPACQQTTRNGATRQIVHTLLHT
Nucleotide Sequence CTGGACTGGCCAGCCTGCCAACAGACCACCAGAAACGGGGCCACCAGACAGATAGTCCATACCCTGTTGCACACATGA
CircID chr2:20201916|20202072
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence LLERGGGPTAAWTGQPANRPPETGPPDR
Nucleotide Sequence CTGCTTGAAAGAGGCGGCGGCCCCACGGCAGCCTGGACTGGCCAGCCTGCCAACAGACCACCAGAAACGGGGCCACCAGACAGATAG
CircID chr2:20201916|20202072
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MDYLSGGPVSGGLLAGWPVQAAVGPPPLSSS
Nucleotide Sequence ATGGACTATCTGTCTGGTGGCCCCGTTTCTGGTGGTCTGTTGGCAGGCTGGCCAGTCCAGGCTGCCGTGGGGCCGCCGCCTCTTTCAAGCAGT
CircID chr2:20201916|20202072
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MSLEFVAHVCNRVWTICLVAPFLVVCWQAGQSRLPWGRRLFQAV
Nucleotide Sequence TTGTCTCTTGAGTTTGTCGCTCATGTGTGCAACAGGGTATGGACTATCTGTCTGGTGGCCCCGTTTCTGGTGGTCTGTTGGCAGGCTGGCCAGTCCAGGCTGCCGTGGGGCCGCCGCCTCTTTCAAGCAGTC
CircID chr2:20201916|20202072
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MSLSLMCATGYGLSVWWPRFWWSVGRLASPGCRGAAASFKQ
Nucleotide Sequence TTGAGTTTGTCGCTCATGTGTGCAACAGGGTATGGACTATCTGTCTGGTGGCCCCGTTTCTGGTGGTCTGTTGGCAGGCTGGCCAGTCCAGGCTGCCGTGGGGCCGCCGCCTCTTTCAAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab