CircRNA Information

General Information
circRNA Basic Information
CircID chr2:202298653|202298834
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCATCATCACAACCTCACCAGCATTGAGCATTGCCTCAAATAATAACCCAAATACCCCTCCACATACAAATCTTTTGTTAATCTGATAGTTAAGTTTGAATGCTTTGTCATGCCTCAGCCATCTTTAGACTTGTTTTCTGTCTTTATACTTTTTACAAAATAGGTTTCTGTAGGGATTAA
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:202298653|202298834 hsa-miR-340-5p 0 0 1
chr2:202298653|202298834 hsa-miR-340-3p 0 0 1
chr2:202298653|202298834 hsa-miR-495-5p 0 0 1
chr2:202298653|202298834 hsa-miR-495-3p 0 0 1
chr2:202298653|202298834 hsa-miR-567 0 0 1
chr2:202298653|202298834 hsa-miR-570-5p 0 0 1
chr2:202298653|202298834 hsa-miR-570-3p 0 0 1
chr2:202298653|202298834 hsa-miR-297 0 0 1
chr2:202298653|202298834 hsa-miR-1179 0 0 1
chr2:202298653|202298834 hsa-miR-1294 0 1 1
chr2:202298653|202298834 hsa-miR-548l 0 0 1
chr2:202298653|202298834 hsa-miR-1304-5p 0 0 1
chr2:202298653|202298834 hsa-miR-1304-3p 0 0 1
chr2:202298653|202298834 hsa-miR-548n 0 0 1
chr2:202298653|202298834 hsa-miR-1322 0 0 1
chr2:202298653|202298834 hsa-miR-1827 0 0 1
chr2:202298653|202298834 hsa-miR-142-5p 0 0 1
chr2:202298653|202298834 hsa-miR-361-5p 0 0 1
chr2:202298653|202298834 hsa-miR-299-3p 0 0 1
chr2:202298653|202298834 hsa-miR-330-3p 0 0 1
chr2:202298653|202298834 hsa-miR-138 0 0 1
chr2:202298653|202298834 hsa-miR-608 1 0 0
chr2:202298653|202298834 hsa-miR-649 0 1 0
chr2:202298653|202298834 hsa-miR-658 1 0 0
chr2:202298653|202298834 hsa-miR-762 1 0 0
chr2:202298653|202298834 hsa-miR-3911 1 0 0
chr2:202298653|202298834 hsa-miR-4443 1 0 0
chr2:202298653|202298834 hsa-miR-4491 1 0 0
chr2:202298653|202298834 hsa-miR-4507 1 0 0
chr2:202298653|202298834 hsa-miR-4656 1 0 0
chr2:202298653|202298834 hsa-miR-4657 1 1 0
chr2:202298653|202298834 hsa-miR-4748 1 0 0
chr2:202298653|202298834 hsa-miR-5194 1 1 0
chr2:202298653|202298834 hsa-miR-5698 1 0 0
chr2:202298653|202298834 hsa-miR-5787 1 0 0
chr2:202298653|202298834 hsa-miR-6076 0 1 0
chr2:202298653|202298834 hsa-miR-6086 0 1 0
chr2:202298653|202298834 hsa-miR-9986 0 1 0
chr2:202298653|202298834 hsa-miR-12114 1 0 0
chr2:202298653|202298834 hsa-miR-12124 1 0 0
chr2:202298653|202298834 hsa-miR-138-5p 1 1 0
chr2:202298653|202298834 hsa-miR-6747-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6765-5p 1 1 0
chr2:202298653|202298834 hsa-miR-125a-3p 1 0 0
chr2:202298653|202298834 hsa-miR-7114-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6515-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6880-5p 1 0 0
chr2:202298653|202298834 hsa-miR-7847-3p 1 0 0
chr2:202298653|202298834 hsa-miR-6867-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6727-5p 1 0 0
chr2:202298653|202298834 hsa-miR-8069 1 0 0
chr2:202298653|202298834 hsa-miR-6796-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6782-5p 1 0 0
chr2:202298653|202298834 hsa-miR-7109-5p 1 0 0
chr2:202298653|202298834 hsa-miR-5010-5p 1 0 0
chr2:202298653|202298834 hsa-miR-423-5p 1 0 0
chr2:202298653|202298834 hsa-miR-500a-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6882-5p 0 1 0
chr2:202298653|202298834 hsa-miR-34a-5p 1 0 0
chr2:202298653|202298834 hsa-miR-7158-5p 0 1 0
chr2:202298653|202298834 hsa-miR-1233-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6769b-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6778-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6865-5p 1 1 0
chr2:202298653|202298834 hsa-miR-6752-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6756-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6803-5p 1 0 0
chr2:202298653|202298834 hsa-miR-1249-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6722-3p 1 0 0
chr2:202298653|202298834 hsa-miR-6751-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6779-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6797-5p 1 0 0
chr2:202298653|202298834 hsa-miR-4728-5p 1 0 0
chr2:202298653|202298834 hsa-miR-10526-3p 1 0 0
chr2:202298653|202298834 hsa-miR-328-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6738-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6858-5p 1 0 0
chr2:202298653|202298834 hsa-miR-6883-5p 1 0 0
chr2:202298653|202298834 hsa-miR-34b-5p 0 1 0
chr2:202298653|202298834 hsa-miR-6511a-5p 1 0 0
chr2:202298653|202298834 hsa-miR-3940-5p 1 0 0
chr2:202298653|202298834 hsa-miR-1914-3p 1 0 0
chr2:202298653|202298834 hsa-miR-6736-5p 1 0 0
chr2:202298653|202298834 hsa-miR-4472 1 0 0
chr2:202298653|202298834 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:202298653|202298834
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MIVKFECFVMPQPSLDLFSVFILFTK
Nucleotide Sequence CTGATAGTTAAGTTTGAATGCTTTGTCATGCCTCAGCCATCTTTAGACTTGTTTTCTGTCTTTATACTTTTTACAAAATAG
CircID chr2:202298653|202298834
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MLCHASAIFRLVFCLYTFYKIGFCRD
Nucleotide Sequence ATGCTTTGTCATGCCTCAGCCATCTTTAGACTTGTTTTCTGTCTTTATACTTTTTACAAAATAGGTTTCTGTAGGGATTAA
CircID chr2:202298653|202298834
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MTKHSNLTIRLTKDLYVEGYLGYYLRQCSMLVRL
Nucleotide Sequence ATGACAAAGCATTCAAACTTAACTATCAGATTAACAAAAGATTTGTATGTGGAGGGGTATTTGGGTTATTATTTGAGGCAATGCTCAATGCTGGTGAGGTTGTGA
CircID chr2:202298653|202298834
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MRHDKAFKLNYQINKRFVCGGVFGLLFEAMLNAGEVVMMQ
Nucleotide Sequence CTGAGGCATGACAAAGCATTCAAACTTAACTATCAGATTAACAAAAGATTTGTATGTGGAGGGGTATTTGGGTTATTATTTGAGGCAATGCTCAATGCTGGTGAGGTTGTGATGATGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab