CircRNA Information

General Information
circRNA Basic Information
CircID chr2:20449043|20449288
Strand +
CircType exon
Host Gene ENSG00000143878.9;
Algorism CIRI2;
Sequence CACTGGGAGGGAGGGGAGGGGAAAAAAGGATATACAGGGGCAGGTGTATTCTCTGTACAGAGGTGCAGAGAAAATTTCACATAGCTTTAGAGAATGCCTTGTGGAAAAAAAAAAAATAGGCCCCAATACTTGTTACTGCCCTTTATCAAAACTGTGTGCATGACCTGCACAAATAAAATCACAAAACAGTGTTGCCACATTCTTCAAGGAAACAAAGCAAAATTTAGTGGGTTTCTTTTCCCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:20449043|20449288 hsa-miR-141-5p 0 0 1
chr2:20449043|20449288 hsa-miR-141-3p 0 0 1
chr2:20449043|20449288 hsa-miR-320a-5p 0 0 1
chr2:20449043|20449288 hsa-miR-320a-3p 0 0 1
chr2:20449043|20449288 hsa-miR-200a-5p 0 0 1
chr2:20449043|20449288 hsa-miR-200a-3p 0 0 1
chr2:20449043|20449288 hsa-miR-452-5p 0 0 1
chr2:20449043|20449288 hsa-miR-452-3p 0 0 1
chr2:20449043|20449288 hsa-miR-657 0 0 1
chr2:20449043|20449288 hsa-miR-758-5p 0 0 1
chr2:20449043|20449288 hsa-miR-758-3p 0 0 1
chr2:20449043|20449288 hsa-miR-802 0 0 1
chr2:20449043|20449288 hsa-miR-1208 0 0 1
chr2:20449043|20449288 hsa-miR-501-5p 0 1 1
chr2:20449043|20449288 hsa-miR-502-5p 0 0 1
chr2:20449043|20449288 hsa-miR-324-3p 0 0 1
chr2:20449043|20449288 hsa-miR-320b 0 0 1
chr2:20449043|20449288 hsa-miR-320c 0 0 1
chr2:20449043|20449288 hsa-miR-362-5p 0 0 1
chr2:20449043|20449288 hsa-miR-320d 0 0 1
chr2:20449043|20449288 hsa-miR-513a-3p 0 0 1
chr2:20449043|20449288 hsa-miR-596 1 0 0
chr2:20449043|20449288 hsa-miR-614 1 0 0
chr2:20449043|20449288 hsa-miR-1265 0 1 0
chr2:20449043|20449288 hsa-miR-1913 1 0 0
chr2:20449043|20449288 hsa-miR-1976 1 0 0
chr2:20449043|20449288 hsa-miR-4326 1 0 0
chr2:20449043|20449288 hsa-miR-4268 1 0 0
chr2:20449043|20449288 hsa-miR-4279 1 0 0
chr2:20449043|20449288 hsa-miR-4457 0 1 0
chr2:20449043|20449288 hsa-miR-5090 1 0 0
chr2:20449043|20449288 hsa-miR-8074 1 0 0
chr2:20449043|20449288 hsa-miR-6749-3p 1 0 0
chr2:20449043|20449288 hsa-miR-18a-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6747-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6892-3p 1 0 0
chr2:20449043|20449288 hsa-miR-210-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6881-3p 1 1 0
chr2:20449043|20449288 hsa-miR-6873-5p 0 1 0
chr2:20449043|20449288 hsa-miR-6721-5p 1 0 0
chr2:20449043|20449288 hsa-miR-191-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6832-3p 1 1 0
chr2:20449043|20449288 hsa-miR-6845-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6765-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6882-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4436b-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6772-3p 1 0 0
chr2:20449043|20449288 hsa-miR-1226-5p 1 0 0
chr2:20449043|20449288 hsa-miR-4763-5p 1 0 0
chr2:20449043|20449288 hsa-miR-1247-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6757-3p 1 0 0
chr2:20449043|20449288 hsa-miR-642b-5p 1 0 0
chr2:20449043|20449288 hsa-miR-7111-3p 1 1 0
chr2:20449043|20449288 hsa-miR-6780a-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4446-5p 1 1 0
chr2:20449043|20449288 hsa-miR-146b-3p 1 0 0
chr2:20449043|20449288 hsa-miR-339-5p 1 0 0
chr2:20449043|20449288 hsa-miR-5584-5p 0 1 0
chr2:20449043|20449288 hsa-miR-4646-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4742-3p 1 0 0
chr2:20449043|20449288 hsa-miR-1226-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6804-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6867-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6887-3p 0 1 0
chr2:20449043|20449288 hsa-miR-6752-3p 1 0 0
chr2:20449043|20449288 hsa-miR-891a-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6826-3p 1 1 0
chr2:20449043|20449288 hsa-miR-1914-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6886-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4749-3p 1 0 0
chr2:20449043|20449288 hsa-miR-3124-3p 1 0 0
chr2:20449043|20449288 hsa-miR-331-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6748-3p 1 0 0
chr2:20449043|20449288 hsa-miR-7152-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6847-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6780b-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6800-3p 1 0 0
chr2:20449043|20449288 hsa-miR-10a-5p 1 0 0
chr2:20449043|20449288 hsa-miR-1228-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4485-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6743-5p 1 1 0
chr2:20449043|20449288 hsa-miR-1249-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6879-5p 1 1 0
chr2:20449043|20449288 hsa-miR-4685-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4755-5p 1 0 0
chr2:20449043|20449288 hsa-miR-4632-5p 1 1 0
chr2:20449043|20449288 hsa-miR-4436b-3p 0 1 0
chr2:20449043|20449288 hsa-miR-6877-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6790-5p 1 0 0
chr2:20449043|20449288 hsa-miR-4722-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6727-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6893-3p 1 0 0
chr2:20449043|20449288 hsa-miR-4757-5p 1 0 0
chr2:20449043|20449288 hsa-miR-6756-3p 1 1 0
chr2:20449043|20449288 hsa-miR-6810-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6775-3p 1 0 0
chr2:20449043|20449288 hsa-miR-3059-5p 1 0 0
chr2:20449043|20449288 hsa-miR-3622a-3p 1 0 0
chr2:20449043|20449288 hsa-miR-6819-3p 1 0 0
chr2:20449043|20449288 hsa-miR-5006-3p 1 0 0
chr2:20449043|20449288 hsa-miR-3622b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:20449043|20449288
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MPCGKKKNRPQYLLLPFIKTVCMTCTNKITKQCCHILQGNKAKFSGFLFPL
Nucleotide Sequence ATGCCTTGTGGAAAAAAAAAAAATAGGCCCCAATACTTGTTACTGCCCTTTATCAAAACTGTGTGCATGACCTGCACAAATAAAATCACAAAACAGTGTTGCCACATTCTTCAAGGAAACAAAGCAAAATTTAGTGGGTTTCTTTTCCCTCTC
CircID chr2:20449043|20449288
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MYRGAEKISHSFRECLVEKKKIGPNTCYCPLSKLCA
Nucleotide Sequence CTGTACAGAGGTGCAGAGAAAATTTCACATAGCTTTAGAGAATGCCTTGTGGAAAAAAAAAAAATAGGCCCCAATACTTGTTACTGCCCTTTATCAAAACTGTGTGCATGA
CircID chr2:20449043|20449288
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence LGGRGGEKRIYRGRCILCTEVQRKFHIALENALWKKKK
Nucleotide Sequence CTGGGAGGGAGGGGAGGGGAAAAAAGGATATACAGGGGCAGGTGTATTCTCTGTACAGAGGTGCAGAGAAAATTTCACATAGCTTTAGAGAATGCCTTGTGGAAAAAAAAAAAATAG
CircID chr2:20449043|20449288
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MGPIFFFSTRHSLKLCEIFSAPLYREYTCPCISFFPLPSLPV
Nucleotide Sequence TTGGGGCCTATTTTTTTTTTTTCCACAAGGCATTCTCTAAAGCTATGTGAAATTTTCTCTGCACCTCTGTACAGAGAATACACCTGCCCCTGTATATCCTTTTTTCCCCTCCCCTCCCTCCCAGTG
CircID chr2:20449043|20449288
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MWQHCFVILFVQVMHTVLIKGSNKYWGLFFFFPQGIL
Nucleotide Sequence ATGTGGCAACACTGTTTTGTGATTTTATTTGTGCAGGTCATGCACACAGTTTTGATAAAGGGCAGTAACAAGTATTGGGGCCTATTTTTTTTTTTTCCACAAGGCATTCTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab