CircRNA Information

General Information
circRNA Basic Information
CircID chr2:20590385|20590574
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCTATCACAGACTATCACAGCCTCTCAGGGCTGTCCTTCTCTGTAGAAGGATGATGGGACCCGATGCCTCTGGGCCCTGCCTCACCCCCTCATCCCGGAGCAGCCCCACAGCCTCGCTCCCCTTGGCGATCTCTGGTTCCAGCTGTTGCTCTGTCAACCTCATTAGGTCACGTCCCCGTACTCCACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:20590385|20590574 hsa-miR-192-5p 0 0 1
chr2:20590385|20590574 hsa-miR-192-3p 0 0 1
chr2:20590385|20590574 hsa-miR-215-5p 0 0 1
chr2:20590385|20590574 hsa-miR-215-3p 0 0 1
chr2:20590385|20590574 hsa-miR-563 0 0 1
chr2:20590385|20590574 hsa-miR-939-5p 0 0 1
chr2:20590385|20590574 hsa-miR-939-3p 0 0 1
chr2:20590385|20590574 hsa-miR-940 1 1 1
chr2:20590385|20590574 hsa-miR-1237-5p 0 0 1
chr2:20590385|20590574 hsa-miR-1237-3p 0 0 1
chr2:20590385|20590574 hsa-miR-1248 0 0 1
chr2:20590385|20590574 hsa-miR-1255a 0 0 1
chr2:20590385|20590574 hsa-miR-1827 0 0 1
chr2:20590385|20590574 hsa-miR-139-5p 0 0 1
chr2:20590385|20590574 hsa-miR-491-5p 0 0 1
chr2:20590385|20590574 hsa-miR-485-5p 0 0 1
chr2:20590385|20590574 hsa-miR-423-5p 0 0 1
chr2:20590385|20590574 hsa-miR-1207-3p 0 0 1
chr2:20590385|20590574 hsa-miR-1207-5p 1 0 1
chr2:20590385|20590574 hsa-miR-125a-5p 0 1 1
chr2:20590385|20590574 hsa-miR-125b 0 0 1
chr2:20590385|20590574 hsa-miR-1255b 0 0 1
chr2:20590385|20590574 hsa-miR-638 1 1 0
chr2:20590385|20590574 hsa-miR-650 1 1 0
chr2:20590385|20590574 hsa-miR-663a 1 0 0
chr2:20590385|20590574 hsa-miR-762 1 0 0
chr2:20590385|20590574 hsa-miR-760 1 0 0
chr2:20590385|20590574 hsa-miR-921 0 1 0
chr2:20590385|20590574 hsa-miR-1294 1 0 0
chr2:20590385|20590574 hsa-miR-1268a 1 0 0
chr2:20590385|20590574 hsa-miR-1275 1 0 0
chr2:20590385|20590574 hsa-miR-3147 1 0 0
chr2:20590385|20590574 hsa-miR-3165 1 0 0
chr2:20590385|20590574 hsa-miR-3196 1 0 0
chr2:20590385|20590574 hsa-miR-4298 1 0 0
chr2:20590385|20590574 hsa-miR-3918 0 1 0
chr2:20590385|20590574 hsa-miR-1268b 1 0 0
chr2:20590385|20590574 hsa-miR-4449 1 0 0
chr2:20590385|20590574 hsa-miR-3689c 0 1 0
chr2:20590385|20590574 hsa-miR-4488 1 0 0
chr2:20590385|20590574 hsa-miR-4498 1 0 0
chr2:20590385|20590574 hsa-miR-4505 1 0 0
chr2:20590385|20590574 hsa-miR-4525 1 0 0
chr2:20590385|20590574 hsa-miR-4651 1 0 0
chr2:20590385|20590574 hsa-miR-4656 1 0 0
chr2:20590385|20590574 hsa-miR-4688 1 0 0
chr2:20590385|20590574 hsa-miR-4706 1 0 0
chr2:20590385|20590574 hsa-miR-4710 0 1 0
chr2:20590385|20590574 hsa-miR-4741 1 0 0
chr2:20590385|20590574 hsa-miR-5090 1 0 0
chr2:20590385|20590574 hsa-miR-5698 1 0 0
chr2:20590385|20590574 hsa-miR-6075 1 1 0
chr2:20590385|20590574 hsa-miR-6086 1 1 0
chr2:20590385|20590574 hsa-miR-6090 1 1 0
chr2:20590385|20590574 hsa-miR-6132 0 1 0
chr2:20590385|20590574 hsa-miR-6133 1 0 0
chr2:20590385|20590574 hsa-miR-7150 1 0 0
chr2:20590385|20590574 hsa-miR-7974 1 1 0
chr2:20590385|20590574 hsa-miR-7976 0 1 0
chr2:20590385|20590574 hsa-miR-8072 1 0 0
chr2:20590385|20590574 hsa-miR-8085 1 0 0
chr2:20590385|20590574 hsa-miR-8089 1 0 0
chr2:20590385|20590574 hsa-miR-12114 0 1 0
chr2:20590385|20590574 hsa-miR-12115 1 0 0
chr2:20590385|20590574 hsa-miR-12127 0 1 0
chr2:20590385|20590574 hsa-miR-6734-5p 1 1 0
chr2:20590385|20590574 hsa-miR-504-3p 1 0 0
chr2:20590385|20590574 hsa-miR-6747-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6765-5p 1 1 0
chr2:20590385|20590574 hsa-miR-671-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6825-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4687-3p 1 0 0
chr2:20590385|20590574 hsa-miR-6799-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6728-5p 1 0 0
chr2:20590385|20590574 hsa-miR-5187-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6089 1 0 0
chr2:20590385|20590574 hsa-miR-3192-5p 0 1 0
chr2:20590385|20590574 hsa-miR-6880-5p 1 1 0
chr2:20590385|20590574 hsa-miR-7847-3p 1 0 0
chr2:20590385|20590574 hsa-miR-6890-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6721-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6742-5p 1 0 0
chr2:20590385|20590574 hsa-miR-3151-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6796-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6829-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6732-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6805-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6798-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6770-5p 0 1 0
chr2:20590385|20590574 hsa-miR-486-3p 1 0 0
chr2:20590385|20590574 hsa-miR-6881-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6810-5p 1 0 0
chr2:20590385|20590574 hsa-miR-7855-5p 1 0 0
chr2:20590385|20590574 hsa-miR-5006-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6786-5p 1 0 0
chr2:20590385|20590574 hsa-miR-5088-5p 0 1 0
chr2:20590385|20590574 hsa-miR-1226-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4640-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6753-5p 1 0 0
chr2:20590385|20590574 hsa-miR-1908-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6771-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4787-5p 1 0 0
chr2:20590385|20590574 hsa-miR-149-3p 1 0 0
chr2:20590385|20590574 hsa-miR-937-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6824-5p 1 0 0
chr2:20590385|20590574 hsa-miR-3158-5p 0 1 0
chr2:20590385|20590574 hsa-miR-5010-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4776-5p 1 0 0
chr2:20590385|20590574 hsa-miR-7112-5p 1 0 0
chr2:20590385|20590574 hsa-miR-3191-3p 1 1 0
chr2:20590385|20590574 hsa-miR-1225-5p 1 0 0
chr2:20590385|20590574 hsa-miR-1296-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6856-3p 0 1 0
chr2:20590385|20590574 hsa-miR-6501-3p 0 1 0
chr2:20590385|20590574 hsa-miR-6761-5p 0 1 0
chr2:20590385|20590574 hsa-miR-4679 0 1 0
chr2:20590385|20590574 hsa-miR-3689b-3p 0 1 0
chr2:20590385|20590574 hsa-miR-4763-3p 1 1 0
chr2:20590385|20590574 hsa-miR-6812-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6816-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6870-5p 1 0 0
chr2:20590385|20590574 hsa-miR-1343-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6726-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6743-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6752-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6756-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6803-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6813-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6819-5p 1 0 0
chr2:20590385|20590574 hsa-miR-7110-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6751-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6808-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6879-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4728-5p 1 0 0
chr2:20590385|20590574 hsa-miR-5196-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6780b-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6836-5p 1 1 0
chr2:20590385|20590574 hsa-miR-10396a-5p 1 0 0
chr2:20590385|20590574 hsa-miR-10396b-5p 1 1 0
chr2:20590385|20590574 hsa-miR-1909-3p 1 0 0
chr2:20590385|20590574 hsa-miR-328-5p 1 0 0
chr2:20590385|20590574 hsa-miR-3689a-3p 0 1 0
chr2:20590385|20590574 hsa-miR-4632-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4649-5p 1 1 0
chr2:20590385|20590574 hsa-miR-4685-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4725-3p 1 0 0
chr2:20590385|20590574 hsa-miR-4745-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4749-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6729-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6738-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6777-5p 1 1 0
chr2:20590385|20590574 hsa-miR-6794-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6795-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6846-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6848-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6858-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6883-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6889-5p 1 0 0
chr2:20590385|20590574 hsa-miR-4758-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6855-5p 1 0 0
chr2:20590385|20590574 hsa-miR-10398-3p 1 0 0
chr2:20590385|20590574 hsa-miR-4646-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6891-5p 1 0 0
chr2:20590385|20590574 hsa-miR-6884-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr2:20590385|20590574
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MPHPLIPEQPHSLAPLGDLWFQLLLCQPH
Nucleotide Sequence CTGCCTCACCCCCTCATCCCGGAGCAGCCCCACAGCCTCGCTCCCCTTGGCGATCTCTGGTTCCAGCTGTTGCTCTGTCAACCTCATTAG
CircID chr2:20590385|20590574
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MMGPDASGPCLTPSSRSSPTASLPLAISGSSCCSVNLIRSRPRTPP
Nucleotide Sequence ATGATGGGACCCGATGCCTCTGGGCCCTGCCTCACCCCCTCATCCCGGAGCAGCCCCACAGCCTCGCTCCCCTTGGCGATCTCTGGTTCCAGCTGTTGCTCTGTCAACCTCATTAGGTCACGTCCCCGTACTCCACCT
CircID chr2:20590385|20590574
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MPLGPASPPHPGAAPQPRSPWRSLVPAVALSTSLGHVPVLH
Nucleotide Sequence ATGCCTCTGGGCCCTGCCTCACCCCCTCATCCCGGAGCAGCCCCACAGCCTCGCTCCCCTTGGCGATCTCTGGTTCCAGCTGTTGCTCTGTCAACCTCATTAGGTCACGTCCCCGTACTCCAC
CircID chr2:20590385|20590574
ORF Type ORF4
Protein Length 52
Nucleotide Length 159
Protein Sequence MRLTEQQLEPEIAKGSEAVGLLRDEGVRQGPEASGPIILLQRRTALRGCDSL
Nucleotide Sequence ATGAGGTTGACAGAGCAACAGCTGGAACCAGAGATCGCCAAGGGGAGCGAGGCTGTGGGGCTGCTCCGGGATGAGGGGGTGAGGCAGGGCCCAGAGGCATCGGGTCCCATCATCCTTCTACAGAGAAGGACAGCCCTGAGAGGCTGTGATAGTCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab