CircRNA Information

General Information
circRNA Basic Information
CircID chr2:212124752|212124903
Strand -
CircType exon
Host Gene ENSG00000178568.14;
Algorism find_circ;CIRI2;DCC;
Sequence TGTGTGCAGGAACGGAGAATAAACTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:212124752|212124903 hsa-miR-570-5p 0 0 1
chr2:212124752|212124903 hsa-miR-570-3p 0 0 1
chr2:212124752|212124903 hsa-miR-619-5p 0 0 1
chr2:212124752|212124903 hsa-miR-619-3p 0 0 1
chr2:212124752|212124903 hsa-miR-620 0 0 1
chr2:212124752|212124903 hsa-miR-631 0 0 1
chr2:212124752|212124903 hsa-miR-634 0 0 1
chr2:212124752|212124903 hsa-miR-873-5p 0 0 1
chr2:212124752|212124903 hsa-miR-873-3p 0 0 1
chr2:212124752|212124903 hsa-miR-548e-5p 0 0 1
chr2:212124752|212124903 hsa-miR-548e-3p 0 0 1
chr2:212124752|212124903 hsa-miR-1286 0 0 1
chr2:212124752|212124903 hsa-miR-1294 0 1 1
chr2:212124752|212124903 hsa-miR-548g-5p 0 0 1
chr2:212124752|212124903 hsa-miR-548g-3p 0 0 1
chr2:212124752|212124903 hsa-miR-1270 0 0 1
chr2:212124752|212124903 hsa-let-7i-3p 0 1 1
chr2:212124752|212124903 hsa-miR-615-3p 0 0 1
chr2:212124752|212124903 hsa-miR-490-3p 0 1 1
chr2:212124752|212124903 hsa-miR-338-3p 0 0 1
chr2:212124752|212124903 hsa-miR-548a-3p 0 0 1
chr2:212124752|212124903 hsa-miR-1308 0 0 1
chr2:212124752|212124903 hsa-miR-548f 0 0 1
chr2:212124752|212124903 hsa-miR-453 0 0 1
chr2:212124752|212124903 hsa-miR-933 1 0 0
chr2:212124752|212124903 hsa-miR-3176 1 0 0
chr2:212124752|212124903 hsa-miR-4256 0 1 0
chr2:212124752|212124903 hsa-miR-4254 0 1 0
chr2:212124752|212124903 hsa-miR-3661 0 1 0
chr2:212124752|212124903 hsa-miR-4449 1 0 0
chr2:212124752|212124903 hsa-miR-4669 1 0 0
chr2:212124752|212124903 hsa-miR-6081 1 0 0
chr2:212124752|212124903 hsa-miR-6086 0 1 0
chr2:212124752|212124903 hsa-miR-9986 1 1 0
chr2:212124752|212124903 hsa-miR-6873-3p 0 1 0
chr2:212124752|212124903 hsa-miR-7110-3p 0 1 0
chr2:212124752|212124903 hsa-miR-6817-3p 0 1 0
chr2:212124752|212124903 hsa-miR-6845-3p 0 1 0
chr2:212124752|212124903 hsa-miR-6772-5p 1 0 0
chr2:212124752|212124903 hsa-miR-6749-5p 1 0 0
chr2:212124752|212124903 hsa-miR-6821-3p 0 1 0
chr2:212124752|212124903 hsa-miR-6861-3p 0 1 0
chr2:212124752|212124903 hsa-miR-516b-5p 0 1 0
chr2:212124752|212124903 hsa-miR-6800-3p 0 1 0
chr2:212124752|212124903 hsa-miR-5001-5p 1 0 0
chr2:212124752|212124903 hsa-miR-3116 0 1 0
chr2:212124752|212124903 hsa-miR-6751-3p 1 0 0
chr2:212124752|212124903 hsa-miR-323b-5p 0 1 0
chr2:212124752|212124903 hsa-miR-6838-5p 0 1 0
chr2:212124752|212124903 hsa-miR-301a-5p 0 1 0
chr2:212124752|212124903 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:212124752|212124903
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MTWNSSTEPCASTMKTVRLSWATWR
Nucleotide Sequence CTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAA
CircID chr2:212124752|212124903
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLR
Nucleotide Sequence CTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:212124752|212124903 TAF15 0 1 0
chr2:212124752|212124903 NOP56 1 1 0
chr2:212124752|212124903 NOP58 1 1 0
chr2:212124752|212124903 ELAVL3 0 1 0
chr2:212124752|212124903 HNRNPA1 0 2 0
chr2:212124752|212124903 U2AF2 1 0 0
chr2:212124752|212124903 EIF3D 0 1 0
chr2:212124752|212124903 DDX54 0 1 0
chr2:212124752|212124903 TIAL1 0 1 0
chr2:212124752|212124903 FBL 0 0 1
chr2:212124752|212124903 ELAVL1 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab