CircRNA Information

General Information
circRNA Basic Information
CircID chr2:215406389|215407153
Strand +
CircType exon
Host Gene ENSG00000115414.17;
Algorism CIRI2;
Sequence AAGAAACCACTGGCACCCCACGCTCAGGTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:215406389|215407153 hsa-miR-192-5p 0 0 1
chr2:215406389|215407153 hsa-miR-192-3p 0 0 1
chr2:215406389|215407153 hsa-miR-215-5p 0 0 1
chr2:215406389|215407153 hsa-miR-215-3p 0 0 1
chr2:215406389|215407153 hsa-miR-608 0 0 1
chr2:215406389|215407153 hsa-miR-631 0 0 1
chr2:215406389|215407153 hsa-miR-657 0 0 1
chr2:215406389|215407153 hsa-miR-668-5p 0 0 1
chr2:215406389|215407153 hsa-miR-668-3p 0 0 1
chr2:215406389|215407153 hsa-miR-1205 0 0 1
chr2:215406389|215407153 hsa-miR-1266-5p 0 0 1
chr2:215406389|215407153 hsa-miR-1266-3p 0 0 1
chr2:215406389|215407153 hsa-miR-140-5p 0 0 1
chr2:215406389|215407153 hsa-miR-542-5p 1 0 1
chr2:215406389|215407153 hsa-miR-342-5p 0 1 1
chr2:215406389|215407153 hsa-miR-509-3-5p 0 0 1
chr2:215406389|215407153 hsa-miR-509-5p 0 0 1
chr2:215406389|215407153 hsa-miR-637 1 0 0
chr2:215406389|215407153 hsa-miR-638 1 0 0
chr2:215406389|215407153 hsa-miR-663a 1 0 0
chr2:215406389|215407153 hsa-miR-1183 1 1 0
chr2:215406389|215407153 hsa-miR-1268a 1 0 0
chr2:215406389|215407153 hsa-miR-1269a 1 0 0
chr2:215406389|215407153 hsa-miR-4281 1 0 0
chr2:215406389|215407153 hsa-miR-3937 0 1 0
chr2:215406389|215407153 hsa-miR-1268b 1 0 0
chr2:215406389|215407153 hsa-miR-4418 0 1 0
chr2:215406389|215407153 hsa-miR-378g 1 0 0
chr2:215406389|215407153 hsa-miR-4440 1 0 0
chr2:215406389|215407153 hsa-miR-4488 1 0 0
chr2:215406389|215407153 hsa-miR-4535 1 0 0
chr2:215406389|215407153 hsa-miR-4656 1 0 0
chr2:215406389|215407153 hsa-miR-4658 1 0 0
chr2:215406389|215407153 hsa-miR-4706 1 0 0
chr2:215406389|215407153 hsa-miR-4710 1 0 0
chr2:215406389|215407153 hsa-miR-4721 1 0 0
chr2:215406389|215407153 hsa-miR-4734 1 0 0
chr2:215406389|215407153 hsa-miR-5698 1 0 0
chr2:215406389|215407153 hsa-miR-7703 0 1 0
chr2:215406389|215407153 hsa-miR-8085 1 1 0
chr2:215406389|215407153 hsa-miR-9900 0 1 0
chr2:215406389|215407153 hsa-miR-11401 0 1 0
chr2:215406389|215407153 hsa-miR-3692-3p 0 1 0
chr2:215406389|215407153 hsa-miR-3692-5p 1 0 0
chr2:215406389|215407153 hsa-miR-7851-3p 1 0 0
chr2:215406389|215407153 hsa-miR-3192-5p 0 1 0
chr2:215406389|215407153 hsa-miR-7108-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6805-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6798-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4793-3p 0 1 0
chr2:215406389|215407153 hsa-miR-1226-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6853-5p 1 1 0
chr2:215406389|215407153 hsa-miR-1908-5p 1 0 0
chr2:215406389|215407153 hsa-miR-1228-5p 1 0 0
chr2:215406389|215407153 hsa-miR-92b-5p 1 0 0
chr2:215406389|215407153 hsa-miR-149-3p 1 0 0
chr2:215406389|215407153 hsa-miR-3616-3p 0 1 0
chr2:215406389|215407153 hsa-miR-6824-5p 1 0 0
chr2:215406389|215407153 hsa-miR-5010-5p 1 0 0
chr2:215406389|215407153 hsa-miR-574-5p 1 1 0
chr2:215406389|215407153 hsa-miR-1307-3p 1 0 0
chr2:215406389|215407153 hsa-miR-6773-3p 0 1 0
chr2:215406389|215407153 hsa-miR-3912-5p 0 1 0
chr2:215406389|215407153 hsa-miR-4763-3p 1 0 0
chr2:215406389|215407153 hsa-miR-6787-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6756-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6803-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6851-5p 1 0 0
chr2:215406389|215407153 hsa-miR-10401-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6751-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6779-5p 1 0 0
chr2:215406389|215407153 hsa-miR-5196-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6836-5p 1 0 0
chr2:215406389|215407153 hsa-miR-10396a-5p 1 0 0
chr2:215406389|215407153 hsa-miR-10396b-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4632-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4649-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4725-3p 1 0 0
chr2:215406389|215407153 hsa-miR-6729-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6777-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6848-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4723-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6885-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4758-5p 1 0 0
chr2:215406389|215407153 hsa-miR-30c-1-3p 1 0 0
chr2:215406389|215407153 hsa-miR-6731-5p 1 1 0
chr2:215406389|215407153 hsa-miR-1199-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6736-5p 1 0 0
chr2:215406389|215407153 hsa-miR-4646-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6785-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6790-5p 1 0 0
chr2:215406389|215407153 hsa-miR-6791-5p 1 1 0
chr2:215406389|215407153 hsa-miR-10394-5p 0 1 0
chr2:215406389|215407153 hsa-miR-3622b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:215406389|215407153
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MQFVEVTDVKVTIMWTPPESAVTGYRVDVIPVN
Nucleotide Sequence CTGCAGTTTGTGGAAGTGACAGACGTGAAGGTCACCATCATGTGGACACCGCCTGAGAGTGCAGTGACCGGCTACCGTGTGGATGTGATCCCCGTCAAC
CircID chr2:215406389|215407153
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MMVTFTSVTSTNCRSLGEGTVSERGVPVVS
Nucleotide Sequence ATGATGGTGACCTTCACGTCTGTCACTTCCACAAACTGCAGGTCCCTGGGAGAGGGCACTGTATCTGAGCGTGGGGTGCCAGTGGTTTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab