CircRNA Information

General Information
circRNA Basic Information
CircID chr2:216672940|216673156
Strand +
CircType exon
Host Gene ENSG00000115461.4;
Algorism CIRI2;
Sequence GGCAACCGCCAAGCCCCCCTCAAGGTGGGACAGTACCCCGGACCCATCCACTCACTCCTGAGAGGGCTCCGGCCCAGAATGGGAACCTCAGAGAAGAGCTCTAAGGAGAAGAAACCCCATAGCGTCAGAGAGGATATGTCTGGCTTCCAAGAGAAAGGAGGCTCCGTTTTGCAAAGTGGAGGAGGGACGAGGGACAGGGGTTTCACCAGCCAGCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:216672940|216673156 hsa-miR-432-5p 0 0 1
chr2:216672940|216673156 hsa-miR-432-3p 0 0 1
chr2:216672940|216673156 hsa-miR-527 0 0 1
chr2:216672940|216673156 hsa-miR-612 0 0 1
chr2:216672940|216673156 hsa-miR-942-5p 0 0 1
chr2:216672940|216673156 hsa-miR-942-3p 0 0 1
chr2:216672940|216673156 hsa-miR-1203 0 0 1
chr2:216672940|216673156 hsa-miR-1266-5p 0 0 1
chr2:216672940|216673156 hsa-miR-1266-3p 0 0 1
chr2:216672940|216673156 hsa-miR-671-5p 0 0 1
chr2:216672940|216673156 hsa-miR-339-5p 0 1 1
chr2:216672940|216673156 hsa-miR-423-5p 0 0 1
chr2:216672940|216673156 hsa-miR-1224-3p 0 0 1
chr2:216672940|216673156 hsa-miR-518a-5p 0 0 1
chr2:216672940|216673156 hsa-miR-450b-5p 0 0 1
chr2:216672940|216673156 hsa-miR-1260 0 0 1
chr2:216672940|216673156 hsa-miR-1280 0 0 1
chr2:216672940|216673156 hsa-miR-1233 0 0 1
chr2:216672940|216673156 hsa-miR-138 0 0 1
chr2:216672940|216673156 hsa-miR-1285 0 0 1
chr2:216672940|216673156 hsa-miR-762 1 0 0
chr2:216672940|216673156 hsa-miR-4281 1 0 0
chr2:216672940|216673156 hsa-miR-3911 1 0 0
chr2:216672940|216673156 hsa-miR-4741 1 0 0
chr2:216672940|216673156 hsa-miR-5193 0 1 0
chr2:216672940|216673156 hsa-miR-6127 1 0 0
chr2:216672940|216673156 hsa-miR-6745 1 0 0
chr2:216672940|216673156 hsa-miR-4433b-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6734-5p 0 1 0
chr2:216672940|216673156 hsa-miR-4433a-3p 1 1 0
chr2:216672940|216673156 hsa-miR-149-5p 1 0 0
chr2:216672940|216673156 hsa-miR-7160-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6741-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6842-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6817-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6845-3p 1 0 0
chr2:216672940|216673156 hsa-miR-4655-3p 0 1 0
chr2:216672940|216673156 hsa-miR-6782-5p 1 1 0
chr2:216672940|216673156 hsa-miR-7855-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6784-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6818-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6781-5p 0 1 0
chr2:216672940|216673156 hsa-miR-4646-3p 1 1 0
chr2:216672940|216673156 hsa-miR-1225-5p 1 0 0
chr2:216672940|216673156 hsa-miR-4778-3p 0 1 0
chr2:216672940|216673156 hsa-miR-1238-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6895-3p 1 0 0
chr2:216672940|216673156 hsa-miR-503-3p 1 0 0
chr2:216672940|216673156 hsa-miR-6886-3p 1 0 0
chr2:216672940|216673156 hsa-miR-6795-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6748-3p 0 1 0
chr2:216672940|216673156 hsa-miR-3664-3p 0 1 0
chr2:216672940|216673156 hsa-miR-4433b-5p 0 1 0
chr2:216672940|216673156 hsa-miR-6780b-3p 1 1 0
chr2:216672940|216673156 hsa-miR-6732-3p 0 1 0
chr2:216672940|216673156 hsa-miR-6756-5p 1 0 0
chr2:216672940|216673156 hsa-miR-1249-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6722-3p 1 0 0
chr2:216672940|216673156 hsa-miR-6779-5p 1 0 0
chr2:216672940|216673156 hsa-miR-3620-5p 1 0 0
chr2:216672940|216673156 hsa-miR-4745-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6846-5p 0 1 0
chr2:216672940|216673156 hsa-miR-6848-5p 0 1 0
chr2:216672940|216673156 hsa-miR-6858-5p 1 0 0
chr2:216672940|216673156 hsa-miR-939-5p 1 0 0
chr2:216672940|216673156 hsa-miR-4758-5p 1 1 0
chr2:216672940|216673156 hsa-miR-6791-3p 0 1 0
chr2:216672940|216673156 hsa-miR-6849-5p 0 1 0
chr2:216672940|216673156 hsa-miR-6791-5p 1 0 0
chr2:216672940|216673156 hsa-miR-6810-3p 1 0 0
chr2:216672940|216673156 hsa-miR-6829-3p 1 0 0
chr2:216672940|216673156 hsa-miR-3059-5p 0 1 0
chr2:216672940|216673156 hsa-miR-4723-3p 0 1 0
chr2:216672940|216673156 hsa-miR-3085-3p 0 1 0
chr2:216672940|216673156 hsa-miR-4768-5p 0 1 0
chr2:216672940|216673156 hsa-miR-6771-3p 0 1 0
chr2:216672940|216673156 hsa-miR-6764-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:216672940|216673156
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MRGLRPRMGTSEKSSKEKKPHSVREDMSGFQEKGGSVLQSGGGTRDRGFTSQQ
Nucleotide Sequence CTGAGAGGGCTCCGGCCCAGAATGGGAACCTCAGAGAAGAGCTCTAAGGAGAAGAAACCCCATAGCGTCAGAGAGGATATGTCTGGCTTCCAAGAGAAAGGAGGCTCCGTTTTGCAAAGTGGAGGAGGGACGAGGGACAGGGGTTTCACCAGCCAGCAA
CircID chr2:216672940|216673156
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MASKRKEAPFCKVEEGRGTGVSPASN
Nucleotide Sequence CTGGCTTCCAAGAGAAAGGAGGCTCCGTTTTGCAAAGTGGAGGAGGGACGAGGGACAGGGGTTTCACCAGCCAGCAAC
CircID chr2:216672940|216673156
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence LLAGETPVPRPSSTLQNGASFLLEARHILSDAMGFLLLRALL
Nucleotide Sequence TTGCTGGCTGGTGAAACCCCTGTCCCTCGTCCCTCCTCCACTTTGCAAAACGGAGCCTCCTTTCTCTTGGAAGCCAGACATATCCTCTCTGACGCTATGGGGTTTCTTCTCCTTAGAGCTCTTCTCTGA
CircID chr2:216672940|216673156
ORF Type ORF4
Protein Length 69
Nucleotide Length 207
Protein Sequence MVKPLSLVPPPLCKTEPPFSWKPDISSLTLWGFFSLELFSEVPILGRSPLRSEWMGPGYCPTLRGAWRL
Nucleotide Sequence CTGGTGAAACCCCTGTCCCTCGTCCCTCCTCCACTTTGCAAAACGGAGCCTCCTTTCTCTTGGAAGCCAGACATATCCTCTCTGACGCTATGGGGTTTCTTCTCCTTAGAGCTCTTCTCTGAGGTTCCCATTCTGGGCCGGAGCCCTCTCAGGAGTGAGTGGATGGGTCCGGGGTACTGTCCCACCTTGAGGGGGGCTTGGCGGTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab